CuGenDBv2

Gene ID	MS011097
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Genome location	scaffold35:4426866..4427281
RNA-Seq Expression	MS011097
Synteny	MS011097
Gene Ontology terms	GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0005730 - nucleolus (cellular component) GO:0030686 - 90S preribosome (cellular component) GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037498.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]

4.0e-40

83.49

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Query:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL
        R RK+ LKAFDL+TLSEFLPGLEA KQK SAAELK+NCKSRLKFILKERKQMGTVLNHP FQADPL+A+ LHLE TQP EEPKKK  NKNGSKKRKEKKL
Subjt:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL

Query:  KASAGPQQM
        KASA P  M
Subjt:  KASAGPQQM

XP_004144346.1 putative ribosome biogenesis protein slx9-like [Cucumis sativus]

8.8e-40

82.57

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Query:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL
        R RK+ LKAFDL+TLSEFLPGLEA KQK SAAELK+NCKSRLKFILKERKQMGTVLNHP FQADPL+A+ LHLE TQP+EEPKKK  NKNGSKKRKEKK 
Subjt:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL

Query:  KASAGPQQM
        KASA P  M
Subjt:  KASAGPQQM

XP_022146719.1 putative ribosome biogenesis protein slx9-like isoform X1 [Momordica charantia]

5.9e-52

100

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Query:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL
        RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL
Subjt:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL

Query:  KASAGPQQMCV
        KASAGPQQMCV
Subjt:  KASAGPQQMCV

XP_022146723.1 putative ribosome biogenesis protein slx9-like isoform X2 [Momordica charantia]

5.9e-52

100

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Query:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL
        RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL
Subjt:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL

Query:  KASAGPQQMCV
        KASAGPQQMCV
Subjt:  KASAGPQQMCV

XP_023515417.1 putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo]

2.3e-40

83.49

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Query:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL
        R RK+ LKAFDLT LSEFLPGL+APKQK+S  ELKVNCKSRLKF+LKE KQMGTVLNHPAFQADPL AIHLHLESTQPVEEPKKK TN+NGSKKRKEKK 
Subjt:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL

Query:  KASAGPQQM
        KA+A P  M
Subjt:  KASAGPQQM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L113 Uncharacterized protein

4.3e-40

82.57

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Query:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL
        R RK+ LKAFDL+TLSEFLPGLEA KQK SAAELK+NCKSRLKFILKERKQMGTVLNHP FQADPL+A+ LHLE TQP+EEPKKK  NKNGSKKRKEKK 
Subjt:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL

Query:  KASAGPQQM
        KASA P  M
Subjt:  KASAGPQQM

A0A5D3BQL6 Putative ribosome biogenesis protein slx9-like

1.9e-40

83.49

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Query:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL
        R RK+ LKAFDL+TLSEFLPGLEA KQK SAAELK+NCKSRLKFILKERKQMGTVLNHP FQADPL+A+ LHLE TQP EEPKKK  NKNGSKKRKEKKL
Subjt:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL

Query:  KASAGPQQM
        KASA P  M
Subjt:  KASAGPQQM

A0A6J1CYW4 putative ribosome biogenesis protein slx9-like isoform X1

2.8e-52

100

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Query:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL
        RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL
Subjt:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL

Query:  KASAGPQQMCV
        KASAGPQQMCV
Subjt:  KASAGPQQMCV

A0A6J1CZB1 putative ribosome biogenesis protein slx9-like isoform X2

2.8e-52

100

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Query:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL
        RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL
Subjt:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL

Query:  KASAGPQQMCV
        KASAGPQQMCV
Subjt:  KASAGPQQMCV

A0A6J1E5M8 putative ribosome biogenesis protein slx9-like

2.1e-39

81.65

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Query:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL
        R RK+ LKAFDLT LSEFLPGL+APKQK+S  ELKVNCKSRLKF+LKE KQMGTVLNHPAFQADPL AIHLHL+STQPVEE KKK TN+NGSKKRKEKK 
Subjt:  RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKL

Query:  KASAGPQQM
        KA+A P  M
Subjt:  KASAGPQQM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G01640.1 unknown protein

4.0e-22

57.55

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Query:  RSRKKQLKAFDLTTLSEFLPGLEA-PKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQ-PVEEPKKKNTNKNGSKKRKEK
        RSR+K+LKA+DLT LSEFLP   A  K    A ELK+NCK R K +L E +++  VL+HPAFQADP+ +I  HL S Q PVEE  KK TN NGSKKR +K
Subjt:  RSRKKQLKAFDLTTLSEFLPGLEA-PKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQ-PVEEPKKKNTNKNGSKKRKEK

Query:  KLKASA
        K K  +
Subjt:  KLKASA

AT2G01640.2 unknown protein

4.0e-22

57.55

Show/hide

Query:  RSRKKQLKAFDLTTLSEFLPGLEA-PKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQ-PVEEPKKKNTNKNGSKKRKEK
        RSR+K+LKA+DLT LSEFLP   A  K    A ELK+NCK R K +L E +++  VL+HPAFQADP+ +I  HL S Q PVEE  KK TN NGSKKR +K
Subjt:  RSRKKQLKAFDLTTLSEFLPGLEA-PKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQ-PVEEPKKKNTNKNGSKKRKEK

Query:  KLKASA
        K K  +
Subjt:  KLKASA

Sequences

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CDS sequence

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CGAAGTCGAAAAAAGCAGTTGAAAGCTTTCGATCTGACCACTCTGTCAGAGTTTCTTCCTGGATTGGAGGCTCCTAAACAAAAATCTTCTGCAGCCGAGTTAAAAGTAAA
TTGCAAGTCCAGGCTAAAGTTTATATTGAAGGAAAGAAAGCAGATGGGTACAGTTCTTAATCACCCTGCATTCCAGGCAGATCCCTTGAAAGCTATTCATCTACATTTGG
AGAGCACACAGCCAGTTGAGGAACCAAAGAAAAAAAATACGAACAAAAATGGGAGCAAGAAGAGGAAAGAAAAAAAGTTGAAGGCTTCTGCAGGACCTCAACAAATGTGT
GTT

mRNA sequence

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Protein sequence

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RSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQMC
V

MS011097 (gene) of Bitter gourd (TR) v1 genome