; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS011103 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011103
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionglycine-rich RNA-binding protein 4, mitochondrial
Genome locationscaffold35:4459047..4461627
RNA-Seq ExpressionMS011103
SyntenyMS011103
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0006657 - CDP-choline pathway (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0004105 - choline-phosphate cytidylyltransferase activity (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR003954 - RNA recognition motif domain, eukaryote
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439484.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]5.4e-6476.62Show/hide
Query:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MWA+TVS P +SN R P+  +NP   + R SL+LRASFFDYPLASR+MVRNLP+ST+E RLQEEFS+FGE+AEVLLAKDR TKRP+GYAFIQYTCQDDAM
Subjt:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKERPKLELEQVADCWY
        LALENMD K FDGRTIYVE+A+PGS  FGGYPRTSGPPKERP +E E +ADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKERPKLELEQVADCWY

XP_022146475.1 glycine-rich RNA-binding protein 4, mitochondrial [Momordica charantia]1.5e-8296.75Show/hide
Query:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MWASTVSFPCL NPRFPILLSNPTHGTARQSL+LRASFFDYPLASRVMVRNLP+STDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
Subjt:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKERPKLELEQVADCWY
        LALENMDGKKFDGRTIYVEVARPGSD FGGYPRTSGPPKERPKLELE+VADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKERPKLELEQVADCWY

XP_022926008.1 small RNA-binding protein 11, chloroplastic [Cucurbita moschata]4.3e-6177.56Show/hide
Query:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MWA+TVSFP LSN R PI LSN    + RQSL+LRASF DYPLASR+MVRNLP+ST+E RLQEEFS+FGE+AEVLLAKDR+TK P+GYAFIQYT QDDAM
Subjt:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKER--PKLELEQVADCWY
        LALENMD KKFDGRTIYVE+A+PGS  F GYP TSGPPKER  PKL  E+VADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKER--PKLELEQVADCWY

XP_022977992.1 small RNA-binding protein 11, chloroplastic [Cucurbita maxima]1.1e-6177.56Show/hide
Query:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MWA+TVSFP LSN R PI L+N    + RQSL+LRASF DYPLASR+MVRNLP+ST+E RLQEEFS+FGE+AEVLLAKDR+TK P+GYAFIQYT QDDAM
Subjt:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKER--PKLELEQVADCWY
        LALENMD KKFDGRTIYVE+A+PGS  FGGYP TSGPPKER  PKL  E+VADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKER--PKLELEQVADCWY

XP_038883016.1 organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa hispida]4.3e-6168.39Show/hide
Query:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVR--------------------NLPHSTDEGRLQEEFSSFGEVAEVLLAKDR
        MWA+TVSFP +SN R PIL +N T G+ R SL+ RASF DYPLASR++VR                    +LP+ST E RLQEEFS+FGE+AEVLLAKD+
Subjt:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVR--------------------NLPHSTDEGRLQEEFSSFGEVAEVLLAKDR

Query:  VTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKERPKLELEQVADCWY
        +TKRP+GYAFIQYTCQDDAMLALENMD KKFDGR IYVE+A+PGS  FGGYPRTSGPPKERPK+EL++VADCWY
Subjt:  VTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKERPKLELEQVADCWY

TrEMBL top hitse value%identityAlignment
A0A0A0KL21 RRM domain-containing protein2.0e-5973.42Show/hide
Query:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MWA+TVSFP +SN R PI  +N    + R SL+LRASFFDYPLASR+MVRNLP+ST+E RLQEEFS+FGE+AEVLLAKDR TKRP+GYAFIQYTCQDDAM
Subjt:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKERP----KLELEQVADCWY
        LALE MD K FDGR IYVE+A PGS  FGGYPR SGPPKERP     ++ E VADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKERP----KLELEQVADCWY

A0A1S3AYG0 glycine-rich RNA-binding protein 4, mitochondrial2.6e-6476.62Show/hide
Query:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MWA+TVS P +SN R P+  +NP   + R SL+LRASFFDYPLASR+MVRNLP+ST+E RLQEEFS+FGE+AEVLLAKDR TKRP+GYAFIQYTCQDDAM
Subjt:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKERPKLELEQVADCWY
        LALENMD K FDGRTIYVE+A+PGS  FGGYPRTSGPPKERP +E E +ADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKERPKLELEQVADCWY

A0A6J1CXC0 glycine-rich RNA-binding protein 4, mitochondrial7.4e-8396.75Show/hide
Query:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MWASTVSFPCL NPRFPILLSNPTHGTARQSL+LRASFFDYPLASRVMVRNLP+STDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
Subjt:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKERPKLELEQVADCWY
        LALENMDGKKFDGRTIYVEVARPGSD FGGYPRTSGPPKERPKLELE+VADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKERPKLELEQVADCWY

A0A6J1EGU7 small RNA-binding protein 11, chloroplastic2.1e-6177.56Show/hide
Query:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MWA+TVSFP LSN R PI LSN    + RQSL+LRASF DYPLASR+MVRNLP+ST+E RLQEEFS+FGE+AEVLLAKDR+TK P+GYAFIQYT QDDAM
Subjt:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKER--PKLELEQVADCWY
        LALENMD KKFDGRTIYVE+A+PGS  F GYP TSGPPKER  PKL  E+VADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKER--PKLELEQVADCWY

A0A6J1IJY1 small RNA-binding protein 11, chloroplastic5.5e-6277.56Show/hide
Query:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MWA+TVSFP LSN R PI L+N    + RQSL+LRASF DYPLASR+MVRNLP+ST+E RLQEEFS+FGE+AEVLLAKDR+TK P+GYAFIQYT QDDAM
Subjt:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKER--PKLELEQVADCWY
        LALENMD KKFDGRTIYVE+A+PGS  FGGYP TSGPPKER  PKL  E+VADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKER--PKLELEQVADCWY

SwissProt top hitse value%identityAlignment
Q9DED4 Cold-inducible RNA-binding protein B5.0e-1240.23Show/hide
Query:  RVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVA-RPGSDYFGGY
        ++ +  L   T+E  L++ FS +G+++EV++ KDR TKR RG+ F+ +   DDA  A+  M+GK  DGR I V+ A +   D  GGY
Subjt:  RVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVA-RPGSDYFGGY

Q9FFZ6 Small RNA-binding protein 11, chloroplastic1.0e-1236.73Show/hide
Query:  LASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDY--FGGYPRTSGPP
        +AS++ +  L   T E  L E FS  G+V E  +  DRV+ R +G+ F+ +   D+A  AL   +G++ +GRTI+V+ A+        GGYP   GPP
Subjt:  LASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDY--FGGYPRTSGPP

Q9FX45 Organelle RRM domain-containing protein 6, chloroplastic9.2e-1436Show/hide
Query:  SRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGP-PKERPK
        +++ V  L   T E  L++ F  FG +  + +  D+V  RP+G+AF++Y  +++AM A++ M GK  DGR I+VE A+  SD     PR   P P+ +P+
Subjt:  SRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGP-PKERPK

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial9.2e-1439.78Show/hide
Query:  LASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVA-----RPGSDYFGG
        ++S++ V  L   TD+  L++ F+SFGEV E  +  DR T R RG+ F+ ++C+D A  A++ MDGK+ +GR I V +A      P S + GG
Subjt:  LASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVA-----RPGSDYFGG

W8E7I1 RNA-binding protein 31.0e-1239.39Show/hide
Query:  RVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGS-----DYFGGYPRTSGPPK
        ++ V  L  +TDE  L++ FSSFG ++EV++ KDR T+R RG+ FI +T  + A  A+  M+G+  DGR I V+ A   +       FG Y R  G P+
Subjt:  RVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGS-----DYFGGYPRTSGPPK

Arabidopsis top hitse value%identityAlignment
AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.5e-1536Show/hide
Query:  SRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGP-PKERPK
        +++ V  L   T E  L++ F  FG +  + +  D+V  RP+G+AF++Y  +++AM A++ M GK  DGR I+VE A+  SD     PR   P P+ +P+
Subjt:  SRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGP-PKERPK

AT3G23830.1 glycine-rich RNA-binding protein 46.5e-1539.78Show/hide
Query:  LASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVA-----RPGSDYFGG
        ++S++ V  L   TD+  L++ F+SFGEV E  +  DR T R RG+ F+ ++C+D A  A++ MDGK+ +GR I V +A      P S + GG
Subjt:  LASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVA-----RPGSDYFGG

AT3G23830.2 glycine-rich RNA-binding protein 46.5e-1539.78Show/hide
Query:  LASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVA-----RPGSDYFGG
        ++S++ V  L   TD+  L++ F+SFGEV E  +  DR T R RG+ F+ ++C+D A  A++ MDGK+ +GR I V +A      P S + GG
Subjt:  LASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVA-----RPGSDYFGG

AT4G20030.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.5e-4050.32Show/hide
Query:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MW++T+SF     P F    S+  +    +   ++AS F+YPLAS++MVRNLP ST E  L+ EFS+FGE+AEV L KD   KR +GYAFIQ+T QDDA 
Subjt:  MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKERPKLE---LEQVADCWY
        LA+E MD + ++GR IY+++A+PG   F G PRTSGPP++  + E    ++VADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKERPKLE---LEQVADCWY

AT5G08695.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.9e-1437.14Show/hide
Query:  ASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKERPK
        A R+ V  LP+ST E  L E FS FG+++EV L  D+ T+  RG AF+ Y   + A +A++ +D   F GRT+++  A+P +        +S  PK   K
Subjt:  ASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKERPK

Query:  LELEQ
           EQ
Subjt:  LELEQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGCTTCCACCGTCTCCTTCCCTTGTCTTTCAAACCCTCGTTTTCCAATTCTTCTCAGTAATCCAACCCATGGTACAGCCCGTCAATCTCTCCATCTTCGAGCTTC
TTTCTTTGATTATCCCCTTGCCAGCAGAGTCATGGTTAGAAATTTACCGCACTCTACCGATGAGGGTCGGCTGCAAGAAGAATTTTCAAGTTTTGGTGAGGTTGCTGAAG
TGTTATTAGCAAAAGATAGAGTAACAAAAAGACCGAGAGGTTACGCGTTTATTCAATACACTTGCCAAGACGATGCAATGCTGGCACTGGAAAATATGGATGGCAAGAAA
TTTGATGGAAGGACGATCTATGTGGAAGTTGCAAGACCTGGGAGTGATTATTTTGGAGGATATCCAAGAACCTCTGGACCCCCGAAAGAGCGGCCGAAACTGGAGCTAGA
ACAGGTGGCAGATTGCTGGTAT
mRNA sequenceShow/hide mRNA sequence
ATGTGGGCTTCCACCGTCTCCTTCCCTTGTCTTTCAAACCCTCGTTTTCCAATTCTTCTCAGTAATCCAACCCATGGTACAGCCCGTCAATCTCTCCATCTTCGAGCTTC
TTTCTTTGATTATCCCCTTGCCAGCAGAGTCATGGTTAGAAATTTACCGCACTCTACCGATGAGGGTCGGCTGCAAGAAGAATTTTCAAGTTTTGGTGAGGTTGCTGAAG
TGTTATTAGCAAAAGATAGAGTAACAAAAAGACCGAGAGGTTACGCGTTTATTCAATACACTTGCCAAGACGATGCAATGCTGGCACTGGAAAATATGGATGGCAAGAAA
TTTGATGGAAGGACGATCTATGTGGAAGTTGCAAGACCTGGGAGTGATTATTTTGGAGGATATCCAAGAACCTCTGGACCCCCGAAAGAGCGGCCGAAACTGGAGCTAGA
ACAGGTGGCAGATTGCTGGTAT
Protein sequenceShow/hide protein sequence
MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKK
FDGRTIYVEVARPGSDYFGGYPRTSGPPKERPKLELEQVADCWY