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MS011132 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011132
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase
Genome locationscaffold325:72214..72393
RNA-Seq ExpressionMS011132
SyntenyMS011132
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3458125.1 reverse transcriptase [Gossypium australe]6.5e-0546.67Show/hide
Query:  GQCINVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANIKD
        GQC+N DKS   +SKN +E     I Q L V  +  +  YLGLPS  GR K   F N+KD
Subjt:  GQCINVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANIKD

XP_021647684.1 uncharacterized protein LOC110640623 [Hevea brasiliensis]1.7e-0550Show/hide
Query:  GQCINVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANIKD
        GQ IN  KS    S N  E++  LI+Q LQ+     LG YLGLP+  GRNK +VFA I+D
Subjt:  GQCINVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANIKD

XP_022145148.1 uncharacterized protein LOC111014662 [Momordica charantia]2.0e-0656.36Show/hide
Query:  INVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANI
        +N +KSMFMVS+N    + + I+ EL V  T  +G YLGLPSQT RNK QVF NI
Subjt:  INVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANI

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]3.3e-1776.67Show/hide
Query:  GQCINVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANIKD
        GQCIN+DKSMF+VSKN KE+M+ +I+QEL V HTE+LG YLGLPSQTGRNK QVF NIKD
Subjt:  GQCINVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANIKD

XP_030923468.1 uncharacterized protein LOC115950404 [Quercus lobata]3.4e-0650Show/hide
Query:  GQCINVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANIKD
        GQCIN +KS F  S N+K+E+   IK+EL+V   E    YLGLP+  GR K Q F+ +KD
Subjt:  GQCINVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANIKD

TrEMBL top hitse value%identityAlignment
A0A392LWU0 Retrotransposon protein putative unclassified1.6e-0448.33Show/hide
Query:  GQCINVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANIKD
        GQ IN+ KS    SKN  E+M   I+  LQV  +   G YLGLPS  GR K  +F  IKD
Subjt:  GQCINVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANIKD

A0A5B6UWP0 Reverse transcriptase3.1e-0546.67Show/hide
Query:  GQCINVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANIKD
        GQC+N DKS   +SKN +E     I Q L V  +  +  YLGLPS  GR K   F N+KD
Subjt:  GQCINVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANIKD

A0A5B6WEP5 Reverse transcriptase1.2e-0445Show/hide
Query:  GQCINVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANIKD
        GQC+N DKS    S N +E   S++ Q L V  +  +  YLGLPS  GR K   F N+KD
Subjt:  GQCINVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANIKD

A0A6J1CV63 uncharacterized protein LOC1110146629.8e-0756.36Show/hide
Query:  INVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANI
        +N +KSMFMVS+N    + + I+ EL V  T  +G YLGLPSQT RNK QVF NI
Subjt:  INVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANI

A0A6J1DUG8 uncharacterized protein LOC1110241351.6e-1776.67Show/hide
Query:  GQCINVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANIKD
        GQCIN+DKSMF+VSKN KE+M+ +I+QEL V HTE+LG YLGLPSQTGRNK QVF NIKD
Subjt:  GQCINVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANIKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGCCAATGTATTAATGTAGACAAGTCAATGTTCATGGTGAGCAAGAATATCAAGGAGGAGATGATGAGTCTGATCAAGCAGGAGCTACAAGTGATTCACACAGAGACCCT
AGGGCCGTACCTAGGGCTTCCTTCTCAAACAGGGCGGAATAAGAACCAGGTGTTTGCTAATATTAAAGAC
mRNA sequenceShow/hide mRNA sequence
GGCCAATGTATTAATGTAGACAAGTCAATGTTCATGGTGAGCAAGAATATCAAGGAGGAGATGATGAGTCTGATCAAGCAGGAGCTACAAGTGATTCACACAGAGACCCT
AGGGCCGTACCTAGGGCTTCCTTCTCAAACAGGGCGGAATAAGAACCAGGTGTTTGCTAATATTAAAGAC
Protein sequenceShow/hide protein sequence
GQCINVDKSMFMVSKNIKEEMMSLIKQELQVIHTETLGPYLGLPSQTGRNKNQVFANIKD