; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS011142 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011142
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold325:382706..383310
RNA-Seq ExpressionMS011142
SyntenyMS011142
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN75156.1 hypothetical protein VITISV_042643 [Vitis vinifera]2.1e-2334.36Show/hide
Query:  TEEDTIFWRLEATGSFSTSS----LTKDLIPNNPVSSTRLYEAIWKDYYPKKV--ILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFI
        +  D+  W L ++GSFS  S    L+KD   +NP+      + +W    P KV  + W  +H  +NT DKLQ R PY ++   WC +CK   ES  HLF+
Subjt:  TEEDTIFWRLEATGSFSTSS----LTKDLIPNNPVSSTRLYEAIWKDYYPKKV--ILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFI

Query:  TCPFAFGIWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITWSKSSPLF
         CP   G+W  L  L G     P  I  +L  +  G   +   +ILW+       W+ W+ERNNR F DK    E V+D + F    W+  +  F
Subjt:  TCPFAFGIWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITWSKSSPLF

RVW29080.1 putative ribonuclease H protein [Vitis vinifera]2.1e-2335.48Show/hide
Query:  TEEDTIFWRLEATGSFSTSS----LTKDLIPNNPVSSTRLYEAIWKDYYPKKV--ILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFI
        +  D+  W L ++GSFS  S    L+KD   +NP+      + +W    P KV  + W  +H  +NT DKLQ R PY ++   WC +CK   ES  HLF+
Subjt:  TEEDTIFWRLEATGSFSTSS----LTKDLIPNNPVSSTRLYEAIWKDYYPKKV--ILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFI

Query:  TCPFAFGIWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVI
         CP   G+W  L  L G     P  I  +L  +  G   +   +ILW+       W+ W+ERNNR F DK    E V+D + FT++
Subjt:  TCPFAFGIWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVI

RVW90769.1 putative ribonuclease H protein [Vitis vinifera]2.1e-2334.36Show/hide
Query:  TEEDTIFWRLEATGSFSTSS----LTKDLIPNNPVSSTRLYEAIWKDYYPKKV--ILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFI
        +  D+  W L ++GSFS  S    L+KD   +NP+      + +W    P KV  + W  +H  +NT DKLQ R PY ++   WC +CK   ES  HLF+
Subjt:  TEEDTIFWRLEATGSFSTSS----LTKDLIPNNPVSSTRLYEAIWKDYYPKKV--ILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFI

Query:  TCPFAFGIWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITWSKSSPLF
         CP   G+W  L  L G     P  I  +L  +  G   +   +ILW+       W+ W+ERNNR F DK    E V+D + F    W+  +  F
Subjt:  TCPFAFGIWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITWSKSSPLF

RVW96869.1 hypothetical protein CK203_026097 [Vitis vinifera]2.1e-2334.36Show/hide
Query:  TEEDTIFWRLEATGSFSTSS----LTKDLIPNNPVSSTRLYEAIWKDYYPKKV--ILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFI
        +  D+  W L ++GSFS  S    L+KD   +NP+      + +W    P KV  + W  +H  +NT DKLQ R PY ++   WC +CK   ES  HLF+
Subjt:  TEEDTIFWRLEATGSFSTSS----LTKDLIPNNPVSSTRLYEAIWKDYYPKKV--ILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFI

Query:  TCPFAFGIWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITWSKSSPLF
         CP   G+W  L  L G     P  I  +L  +  G   +   +ILW+       W+ W+ERNNR F DK    E V+D + F    W+  +  F
Subjt:  TCPFAFGIWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITWSKSSPLF

XP_030479135.1 uncharacterized protein LOC115696374 [Cannabis sativa]8.5e-2535.91Show/hide
Query:  DTIFWRLEATGSFSTSSLTKDLIPNNPVSSTRLYEAIWKDYYPK--KVILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFITCPFAFG
        D   W+ +ATG FS+ S       N  V+     +++WK       K+ +W  +H  +N  D LQRR P++ IS  WC  CK+  E   HLF+ C F+  
Subjt:  DTIFWRLEATGSFSTSSLTKDLIPNNPVSSTRLYEAIWKDYYPK--KVILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFITCPFAFG

Query:  IWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITW
        +W  LL+ FG   ALP  +P +L   + G   +K ++ILWK  V A  W  W ERN R F D +     V+D + F   TW
Subjt:  IWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITW

TrEMBL top hitse value%identityAlignment
A0A438GJ06 Flowering time control protein FY1.0e-2334.36Show/hide
Query:  TEEDTIFWRLEATGSFSTSS----LTKDLIPNNPVSSTRLYEAIWKDYYPKKV--ILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFI
        +  D+  W L ++GSFS  S    L+KD   +NP+      + +W    P KV  + W  +H  +NT DKLQ R PY ++   WC +CK   ES  HLF+
Subjt:  TEEDTIFWRLEATGSFSTSS----LTKDLIPNNPVSSTRLYEAIWKDYYPKKV--ILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFI

Query:  TCPFAFGIWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITWSKSSPLF
         CP   G+W  L  L G     P  I  +L  +  G   +   +ILW+       W+ W+ERNNR F DK    E V+D + F    W+  +  F
Subjt:  TCPFAFGIWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITWSKSSPLF

A0A438I233 Putative ribonuclease H protein1.0e-2334.36Show/hide
Query:  TEEDTIFWRLEATGSFSTSS----LTKDLIPNNPVSSTRLYEAIWKDYYPKKV--ILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFI
        +  D+  W L ++GSFS  S    L+KD   +NP+      + +W    P KV  + W  +H  +NT DKLQ R PY ++   WC +CK   ES  HLF+
Subjt:  TEEDTIFWRLEATGSFSTSS----LTKDLIPNNPVSSTRLYEAIWKDYYPKKV--ILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFI

Query:  TCPFAFGIWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITWSKSSPLF
         CP   G+W  L  L G     P  I  +L  +  G   +   +ILW+       W+ W+ERNNR F DK    E V+D + F    W+  +  F
Subjt:  TCPFAFGIWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITWSKSSPLF

A0A438IJI0 zf-RVT domain-containing protein1.0e-2334.36Show/hide
Query:  TEEDTIFWRLEATGSFSTSS----LTKDLIPNNPVSSTRLYEAIWKDYYPKKV--ILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFI
        +  D+  W L ++GSFS  S    L+KD   +NP+      + +W    P KV  + W  +H  +NT DKLQ R PY ++   WC +CK   ES  HLF+
Subjt:  TEEDTIFWRLEATGSFSTSS----LTKDLIPNNPVSSTRLYEAIWKDYYPKKV--ILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFI

Query:  TCPFAFGIWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITWSKSSPLF
         CP   G+W  L  L G     P  I  +L  +  G   +   +ILW+       W+ W+ERNNR F DK    E V+D + F    W+  +  F
Subjt:  TCPFAFGIWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITWSKSSPLF

A0A803QGT5 Uncharacterized protein4.1e-2535.91Show/hide
Query:  DTIFWRLEATGSFSTSSLTKDLIPNNPVSSTRLYEAIWKDYYPK--KVILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFITCPFAFG
        D   W+ +ATG FS+ S       N  V+     +++WK       K+ +W  +H  +N  D LQRR P++ IS  WC  CK+  E   HLF+ C F+  
Subjt:  DTIFWRLEATGSFSTSSLTKDLIPNNPVSSTRLYEAIWKDYYPK--KVILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFITCPFAFG

Query:  IWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITW
        +W  LL+ FG   ALP  +P +L   + G   +K ++ILWK  V A  W  W ERN R F D +     V+D + F   TW
Subjt:  IWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITW

A5BZG3 Reverse transcriptase domain-containing protein1.0e-2334.36Show/hide
Query:  TEEDTIFWRLEATGSFSTSS----LTKDLIPNNPVSSTRLYEAIWKDYYPKKV--ILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFI
        +  D+  W L ++GSFS  S    L+KD   +NP+      + +W    P KV  + W  +H  +NT DKLQ R PY ++   WC +CK   ES  HLF+
Subjt:  TEEDTIFWRLEATGSFSTSS----LTKDLIPNNPVSSTRLYEAIWKDYYPKKV--ILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFI

Query:  TCPFAFGIWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITWSKSSPLF
         CP   G+W  L  L G     P  I  +L  +  G   +   +ILW+       W+ W+ERNNR F DK    E V+D + F    W+  +  F
Subjt:  TCPFAFGIWKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITWSKSSPLF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAACTCTCAAATATATACATGACTACTGAAGAGGACACAATTTTCTGGAGACTAGAAGCAACCGGTTCCTTTTCAACAAGCTCCCTCACCAAAGACCTCATACCAAACAA
CCCGGTCTCTTCTACTAGACTTTACGAGGCCATTTGGAAGGACTATTATCCCAAAAAAGTAATTCTATGGGAATGCAGCCACAAAGCCATAAACACTTTTGATAAGCTAC
AAAGGAGACTGCCCTACATGTCTATCTCTCTCCATTGGTGCCCAATGTGTAAGACAGAATCTGAGTCACAGCCACATCTTTTCATCACATGCCCTTTTGCATTTGGTATC
TGGAAAAACCTTCTTCAATTGTTTGGATGGTTCACGGCATTACCTAATGATATCCCTCTTCTGCTGGAGTACACCCTCAATGGCCATCCTTTTACAAAAGAAAAGGAAAT
TCTATGGAAGAATTTTGTTAGAGCCTTCTTTTGGATAACTTGGAGAGAAAGAAACAATCGAACTTTCAACGACAAAGACCTCCCCTATGAAAGGGTTTTTGATTCATTAG
TCTTCACAGTTATCACTTGGAGTAAAAGTTCTCCTCTTTTTCACCATTATTCC
mRNA sequenceShow/hide mRNA sequence
AAACTCTCAAATATATACATGACTACTGAAGAGGACACAATTTTCTGGAGACTAGAAGCAACCGGTTCCTTTTCAACAAGCTCCCTCACCAAAGACCTCATACCAAACAA
CCCGGTCTCTTCTACTAGACTTTACGAGGCCATTTGGAAGGACTATTATCCCAAAAAAGTAATTCTATGGGAATGCAGCCACAAAGCCATAAACACTTTTGATAAGCTAC
AAAGGAGACTGCCCTACATGTCTATCTCTCTCCATTGGTGCCCAATGTGTAAGACAGAATCTGAGTCACAGCCACATCTTTTCATCACATGCCCTTTTGCATTTGGTATC
TGGAAAAACCTTCTTCAATTGTTTGGATGGTTCACGGCATTACCTAATGATATCCCTCTTCTGCTGGAGTACACCCTCAATGGCCATCCTTTTACAAAAGAAAAGGAAAT
TCTATGGAAGAATTTTGTTAGAGCCTTCTTTTGGATAACTTGGAGAGAAAGAAACAATCGAACTTTCAACGACAAAGACCTCCCCTATGAAAGGGTTTTTGATTCATTAG
TCTTCACAGTTATCACTTGGAGTAAAAGTTCTCCTCTTTTTCACCATTATTCC
Protein sequenceShow/hide protein sequence
KLSNIYMTTEEDTIFWRLEATGSFSTSSLTKDLIPNNPVSSTRLYEAIWKDYYPKKVILWECSHKAINTFDKLQRRLPYMSISLHWCPMCKTESESQPHLFITCPFAFGI
WKNLLQLFGWFTALPNDIPLLLEYTLNGHPFTKEKEILWKNFVRAFFWITWRERNNRTFNDKDLPYERVFDSLVFTVITWSKSSPLFHHYS