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MS011188 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011188
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLysM domain-containing protein
Genome locationscaffold239:29913..30161
RNA-Seq ExpressionMS011188
SyntenyMS011188
Gene Ontology termsNA
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AES82004.1 peptidoglycan-binding LysM domain protein [Medicago truncatula]1.3e-1963.29Show/hide
Query:  VIVMVLSCCLCKSQKMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPF
        VI+++L+CC  +  ++ +EM+        ACDEIYVVREGETLHTIS+KCGDPFI++ NPHI+D DDVFPGLVIKI PF
Subjt:  VIVMVLSCCLCKSQKMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPF
MBA0567188.1 hypothetical protein [Gossypium lobatum]1.7e-1962.96Show/hide
Query:  IVMVLSCCLCKSQKMEMEM-------EMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRHT
        +++V+SCC   +++ E  M       +  CDEIYVVREGETLHTIS+KCGDPFI++HNPHI+D DDVFPGLVIKITPF  T
Subjt:  IVMVLSCCLCKSQKMEMEM-------EMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRHT
MBA0867051.1 hypothetical protein [Gossypium schwendimanii]9.9e-2064.2Show/hide
Query:  IVMVLSCCLCKSQKMEMEM-------EMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRHT
        +++V+SCC   ++K E  M       +  CDEIYVVREGETLHTIS+KCGDPFI++HNPHI+D DDVFPGLVIKITPF  T
Subjt:  IVMVLSCCLCKSQKMEMEM-------EMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRHT
RHN48654.1 putative LysM domain-containing protein [Medicago truncatula]1.3e-1963.29Show/hide
Query:  VIVMVLSCCLCKSQKMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPF
        VI+++L+CC  +  ++ +EM+        ACDEIYVVREGETLHTIS+KCGDPFI++ NPHI+D DDVFPGLVIKI PF
Subjt:  VIVMVLSCCLCKSQKMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPF
XP_019186406.1 PREDICTED: uncharacterized protein LOC109181107 [Ipomoea nil]2.2e-1960Show/hide
Query:  IVMVLSCCLCKSQKMEMEMEM----------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRHTI
        +++VLSCC     +   +M +           CDEIYVVREGETLHTISDKCGDPFI++ NPHI+D DDVFPGLVIKITPF H +
Subjt:  IVMVLSCCLCKSQKMEMEMEM----------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRHTI
TrEMBL top hitse value%identityAlignment
A0A1U8NKV3 uncharacterized protein LOC1079484671.1e-1962.96Show/hide
Query:  IVMVLSCCLCKSQKMEMEM-------EMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRHT
        +++V+SCC   +++ E  M       +  CDEIYVVREGETLHTIS+KCGDPFI++HNPHI+D DDVFPGLVIKITPF  T
Subjt:  IVMVLSCCLCKSQKMEMEM-------EMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRHT
A0A396HA20 Putative LysM domain-containing protein6.3e-2063.29Show/hide
Query:  VIVMVLSCCLCKSQKMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPF
        VI+++L+CC  +  ++ +EM+        ACDEIYVVREGETLHTIS+KCGDPFI++ NPHI+D DDVFPGLVIKI PF
Subjt:  VIVMVLSCCLCKSQKMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPF
A0A7J8MR45 LysM domain-containing protein8.2e-2062.96Show/hide
Query:  IVMVLSCCLCKSQKMEMEM-------EMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRHT
        +++V+SCC   +++ E  M       +  CDEIYVVREGETLHTIS+KCGDPFI++HNPHI+D DDVFPGLVIKITPF  T
Subjt:  IVMVLSCCLCKSQKMEMEM-------EMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRHT
A0A7J9M7S9 LysM domain-containing protein4.8e-2064.2Show/hide
Query:  IVMVLSCCLCKSQKMEMEM-------EMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRHT
        +++V+SCC   ++K E  M       +  CDEIYVVREGETLHTIS+KCGDPFI++HNPHI+D DDVFPGLVIKITPF  T
Subjt:  IVMVLSCCLCKSQKMEMEM-------EMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRHT
G7L607 Peptidoglycan-binding LysM domain protein6.3e-2063.29Show/hide
Query:  VIVMVLSCCLCKSQKMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPF
        VI+++L+CC  +  ++ +EM+        ACDEIYVVREGETLHTIS+KCGDPFI++ NPHI+D DDVFPGLVIKI PF
Subjt:  VIVMVLSCCLCKSQKMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein1.7e-1773.47Show/hide
Query:  ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITP
        ACDEIY V+EGETL TIS+KCGDP+I++ NPHI+D DD+FPGL+I+ITP
Subjt:  ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITP
AT4G25433.1 peptidoglycan-binding LysM domain-containing protein1.7e-1761.02Show/hide
Query:  CKSQKMEMEMEMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKI
        C+  + +  ME  C+E+YVV EG+TLH+IS+KCGDPFI++ NPHI+D DDVFPGL+IK+
Subjt:  CKSQKMEMEMEMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKI
AT5G62150.1 peptidoglycan-binding LysM domain-containing protein4.0e-1977.55Show/hide
Query:  CDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPF
        C+EIY+V EGETLHTI DKCGDPFI++ NPHI+D DDVFPGLV+KI PF
Subjt:  CDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGATTGTTATGGTTTTGAGCTGCTGCTTATGCAAGAGCCAAAAGATGGAGATGGAGATGGAGATGGCGTGTGATGAGATATATGTGGTTCGTGAAGGAGAAACTTTGCA
CACAATCAGTGACAAATGTGGAGATCCTTTTATTCTCCAACACAATCCTCATATTAATGATTCTGATGATGTTTTTCCTGGTTTGGTCATCAAGATCACTCCTTTTCGCC
ATACTATTCATCCCAATTTTCTCCTCTTT
mRNA sequenceShow/hide mRNA sequence
GTGATTGTTATGGTTTTGAGCTGCTGCTTATGCAAGAGCCAAAAGATGGAGATGGAGATGGAGATGGCGTGTGATGAGATATATGTGGTTCGTGAAGGAGAAACTTTGCA
CACAATCAGTGACAAATGTGGAGATCCTTTTATTCTCCAACACAATCCTCATATTAATGATTCTGATGATGTTTTTCCTGGTTTGGTCATCAAGATCACTCCTTTTCGCC
ATACTATTCATCCCAATTTTCTCCTCTTT
Protein sequenceShow/hide protein sequence
VIVMVLSCCLCKSQKMEMEMEMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRHTIHPNFLLF