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MS011204 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011204
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpentatricopeptide repeat-containing protein At2g36240
Genome locationscaffold239:120615..120833
RNA-Seq ExpressionMS011204
SyntenyMS011204
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7034501.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]3.0e-1254.79Show/hide
Query:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK
        NS L+ LCNVRKT   +RL ++   ++G        Y  +SGYTMEGNKVEG+  V+EMLDKE IPDIA YN+
Subjt:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK

XP_004140672.1 pentatricopeptide repeat-containing protein At2g36240 [Cucumis sativus]1.8e-1256.16Show/hide
Query:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK
        NS L++LCNVRKT   ++L ++   ++G        Y  VSGYTMEGNKVEG+  V EMLDKEFIPDIA YN+
Subjt:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK

XP_022132469.1 pentatricopeptide repeat-containing protein At2g36240 [Momordica charantia]1.3e-1254.79Show/hide
Query:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK
        NS L++LCNV+KT   +RL ++   ++G        YI +SGYTMEGNKVEG+  V+EMLDKEFIPDIA +N+
Subjt:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK

XP_022925788.1 pentatricopeptide repeat-containing protein At2g36240 [Cucurbita moschata]3.0e-1254.79Show/hide
Query:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK
        NS L+ LCNVRKT   +RL ++   ++G        Y  +SGYTMEGNKVEG+  V+EMLDKE IPDIA YN+
Subjt:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK

XP_022977415.1 pentatricopeptide repeat-containing protein At2g36240 [Cucurbita maxima]3.0e-1254.79Show/hide
Query:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK
        NS L+ LCNVRKT   +RL ++   ++G        Y  +SGYTMEGNKVEG+  V+EMLDKE IPDIA YN+
Subjt:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK

TrEMBL top hitse value%identityAlignment
A0A0A0KA47 Uncharacterized protein8.5e-1356.16Show/hide
Query:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK
        NS L++LCNVRKT   ++L ++   ++G        Y  VSGYTMEGNKVEG+  V EMLDKEFIPDIA YN+
Subjt:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK

A0A1S3CB10 pentatricopeptide repeat-containing protein At2g362405.5e-1254.79Show/hide
Query:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK
        NS L++LCNV KT   ++L ++   ++G        Y  VSGYTMEGNKVEG+  V EMLDKEFIPDIA YN+
Subjt:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK

A0A6J1BT52 pentatricopeptide repeat-containing protein At2g362406.5e-1354.79Show/hide
Query:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK
        NS L++LCNV+KT   +RL ++   ++G        YI +SGYTMEGNKVEG+  V+EMLDKEFIPDIA +N+
Subjt:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK

A0A6J1EG86 pentatricopeptide repeat-containing protein At2g362401.5e-1254.79Show/hide
Query:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK
        NS L+ LCNVRKT   +RL ++   ++G        Y  +SGYTMEGNKVEG+  V+EMLDKE IPDIA YN+
Subjt:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK

A0A6J1IM91 pentatricopeptide repeat-containing protein At2g362401.5e-1254.79Show/hide
Query:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK
        NS L+ LCNVRKT   +RL ++   ++G        Y  +SGYTMEGNKVEG+  V+EMLDKE IPDIA YN+
Subjt:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK

SwissProt top hitse value%identityAlignment
Q9SJN2 Pentatricopeptide repeat-containing protein At2g362403.6e-0838.36Show/hide
Query:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK
        N  LR+LC+   +   +RL ++   ++G        ++ VSG+T EG + EG+  VNEMLDK+ +PDI  YN+
Subjt:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK

Arabidopsis top hitse value%identityAlignment
AT2G36240.1 pentatricopeptide (PPR) repeat-containing protein2.5e-0938.36Show/hide
Query:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK
        N  LR+LC+   +   +RL ++   ++G        ++ VSG+T EG + EG+  VNEMLDK+ +PDI  YN+
Subjt:  NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACTCTTTTCTCCGGAATCTGTGCAATGTAAGGAAAACAGGGAGACCTGATAGGTTGGAGATTGTTGGCATTCAAGCAAGGGGATTGAACCAGACACCAGTAGAGTCCTA
CATTTCAGTTTCTGGGTACACCATGGAAGGCAACAAGGTGGAAGGGAAAACGCCTGTGAATGAGATGTTGGATAAGGAATTCATACCTGATATTGCAGCATATAACAAG
mRNA sequenceShow/hide mRNA sequence
AACTCTTTTCTCCGGAATCTGTGCAATGTAAGGAAAACAGGGAGACCTGATAGGTTGGAGATTGTTGGCATTCAAGCAAGGGGATTGAACCAGACACCAGTAGAGTCCTA
CATTTCAGTTTCTGGGTACACCATGGAAGGCAACAAGGTGGAAGGGAAAACGCCTGTGAATGAGATGTTGGATAAGGAATTCATACCTGATATTGCAGCATATAACAAG
Protein sequenceShow/hide protein sequence
NSFLRNLCNVRKTGRPDRLEIVGIQARGLNQTPVESYISVSGYTMEGNKVEGKTPVNEMLDKEFIPDIAAYNK