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MS011210 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011210
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSmall nuclear ribonucleoprotein G
Genome locationscaffold239:141324..141641
RNA-Seq ExpressionMS011210
SyntenyMS011210
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0034719 - SMN-Sm protein complex (cellular component)
GO:0043186 - P granule (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0097526 - spliceosomal tri-snRNP complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR044641 - Sm-like protein Lsm7/SmG
IPR034098 - Small nuclear ribonucleoprotein G
IPR010920 - LSM domain superfamily
IPR001163 - LSM domain, eukaryotic/archaea-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7820147.1 putative small nuclear ribonucleoprotein G [Senna tora]2.7e-2387.88Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        D    +KLNANR++IGTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNSVVTVEALEPVNRTQ
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

KAF7828925.1 GATA transcription factor 5-like [Senna tora]2.0e-2396.72Show/hide
Query:  VKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        VKLNANR++IGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
Subjt:  VKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

XP_004143329.1 probable small nuclear ribonucleoprotein G [Cucumis sativus]2.7e-2390.91Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        D    +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

XP_022132404.1 probable small nuclear ribonucleoprotein G [Momordica charantia]5.3e-2492.42Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        D    +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

XP_028784792.1 probable small nuclear ribonucleoprotein G [Prosopis alba]1.2e-2389.39Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        D    +KLNANR++IGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

TrEMBL top hitse value%identityAlignment
A0A0A0KHH9 Small nuclear ribonucleoprotein G1.3e-2390.91Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        D    +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

A0A1S3CHS7 Small nuclear ribonucleoprotein G1.3e-2390.91Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        D    +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

A0A5D3C6A2 Small nuclear ribonucleoprotein G1.3e-2390.91Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        D    +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

A0A6J1BSY9 Small nuclear ribonucleoprotein G2.6e-2492.42Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        D    +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

A0A7J9J770 Small nuclear ribonucleoprotein G1.7e-2393.65Show/hide
Query:  FAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        FAVKLNANR+V+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV R Q
Subjt:  FAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

SwissProt top hitse value%identityAlignment
A8MWD9 Putative small nuclear ribonucleoprotein G-like protein 151.6e-1054.69Show/hide
Query:  SDLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV
        +D  F++KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMV IRGNS++ +EALE V
Subjt:  SDLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV

O82221 Probable small nuclear ribonucleoprotein G9.5e-2483.08Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT
        D    +KLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R+
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT

P24715 Probable small nuclear ribonucleoprotein G4.0e-2282.26Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV
        D    + L ANR+++GTLRGFDQFMNLVVDNTVEVNGNEK DIGMVVIRGNSVVTVEALEPV
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV

Q54RX0 Probable small nuclear ribonucleoprotein G7.0e-1157.38Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVE-VNGNEKTDIGMVVIRGNSVVTVEALE
        D   A+KLN NR V G LRGFD FMN+ + +TVE V+  EK +IGMV+IRGNS++ +E LE
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVE-VNGNEKTDIGMVVIRGNSVVTVEALE

Q9VXE0 Probable small nuclear ribonucleoprotein G1.1e-1160.32Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALEPV
        D    +KLN  R V G LRGFD FMN+V+D+TV E   N K +IGMVVIRGNS+V VEAL+ V
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALEPV

Arabidopsis top hitse value%identityAlignment
AT2G03870.1 Small nuclear ribonucleoprotein family protein2.9e-0438.33Show/hide
Query:  VKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV
        VKL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Subjt:  VKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV

AT2G03870.2 Small nuclear ribonucleoprotein family protein2.9e-0438.33Show/hide
Query:  VKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV
        VKL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Subjt:  VKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV

AT2G23930.1 probable small nuclear ribonucleoprotein G6.7e-2583.08Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT
        D    +KLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R+
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT

AT2G23930.2 probable small nuclear ribonucleoprotein G6.7e-2583.08Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT
        D    +KLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R+
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT

AT3G11500.1 Small nuclear ribonucleoprotein family protein8.8e-2581.54Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT
        D    +KLNANR+V+GTLRGFDQFMNLVVDNTVEVNG++KTDIGMVVIRGNS+VTVEALEPV R+
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCTGATTTACATTTTGCAGTAAAACTCAATGCCAACCGCTTGGTAATTGGAACCCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAA
TGGCAATGAGAAAACTGATATTGGCATGGTGGTGATTAGGGGCAATAGTGTTGTCACCGTTGAAGCACTTGAACCTGTGAACAGGACGCAG
mRNA sequenceShow/hide mRNA sequence
TCTGATTTACATTTTGCAGTAAAACTCAATGCCAACCGCTTGGTAATTGGAACCCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAA
TGGCAATGAGAAAACTGATATTGGCATGGTGGTGATTAGGGGCAATAGTGTTGTCACCGTTGAAGCACTTGAACCTGTGAACAGGACGCAG
Protein sequenceShow/hide protein sequence
SDLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ