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MS011222 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011222
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionVacuolar protein sorting 55
Genome locationscaffold239:203193..204320
RNA-Seq ExpressionMS011222
SyntenyMS011222
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007262 - Vps55/LEPROT


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595172.1 Vacuolar protein sorting-associated protein 55-like protein, partial [Cucurbita argyrosperma subsp. sororia]2.7e-5198.04Show/hide
Query:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
        ACALYNNWWP+LSALMYVLVPMPCLFFGGGSTQFL SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
Subjt:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED

Query:  DW
        DW
Subjt:  DW

XP_004143389.2 vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus]7.1e-5299.02Show/hide
Query:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
        ACALYNNWWP+LSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
Subjt:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED

Query:  DW
        DW
Subjt:  DW

XP_008462591.2 PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucumis melo]7.1e-5299.02Show/hide
Query:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
        ACALYNNWWP+LSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
Subjt:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED

Query:  DW
        DW
Subjt:  DW

XP_022133002.1 vacuolar protein sorting-associated protein 55 homolog isoform X1 [Momordica charantia]3.2e-52100Show/hide
Query:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
        ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
Subjt:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED

Query:  DW
        DW
Subjt:  DW

XP_022133003.1 vacuolar protein sorting-associated protein 55 homolog isoform X2 [Momordica charantia]3.2e-52100Show/hide
Query:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
        ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
Subjt:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED

Query:  DW
        DW
Subjt:  DW

TrEMBL top hitse value%identityAlignment
A0A0A0KHI6 Uncharacterized protein3.4e-5299.02Show/hide
Query:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
        ACALYNNWWP+LSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
Subjt:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED

Query:  DW
        DW
Subjt:  DW

A0A1S3CHB4 vacuolar protein sorting-associated protein 55 homolog isoform X23.4e-5299.02Show/hide
Query:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
        ACALYNNWWP+LSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
Subjt:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED

Query:  DW
        DW
Subjt:  DW

A0A1S3CIW0 vacuolar protein sorting-associated protein 55 homolog isoform X13.4e-5299.02Show/hide
Query:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
        ACALYNNWWP+LSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
Subjt:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED

Query:  DW
        DW
Subjt:  DW

A0A6J1BVE3 vacuolar protein sorting-associated protein 55 homolog isoform X11.5e-52100Show/hide
Query:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
        ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
Subjt:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED

Query:  DW
        DW
Subjt:  DW

A0A6J1BXT5 vacuolar protein sorting-associated protein 55 homolog isoform X21.5e-52100Show/hide
Query:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
        ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
Subjt:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED

Query:  DW
        DW
Subjt:  DW

SwissProt top hitse value%identityAlignment
Q9AST6 Vacuolar protein sorting-associated protein 55 homolog2.9e-2457.14Show/hide
Query:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL
        ACAL+NNWWPMLS +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Subjt:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL

Arabidopsis top hitse value%identityAlignment
AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein2.1e-2557.14Show/hide
Query:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL
        ACAL+NNWWPMLS +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Subjt:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL

AT1G32410.2 Vacuolar protein sorting 55 (VPS55) family protein2.1e-2557.14Show/hide
Query:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL
        ACAL+NNWWPMLS +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Subjt:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL

AT1G32410.3 Vacuolar protein sorting 55 (VPS55) family protein2.1e-2557.14Show/hide
Query:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL
        ACAL+NNWWPMLS +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Subjt:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL

AT3G11530.1 Vacuolar protein sorting 55 (VPS55) family protein3.2e-5087.25Show/hide
Query:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
        ACA+Y NWWPMLSALMYV+VPMPC+FFGGGSTQFLISRDGGGWI AAKFLTGASTVGSLAIPIILRHA MI+TGAM IEF SFFIF+CTV+CFHR SL+D
Subjt:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED

Query:  DW
        DW
Subjt:  DW

AT3G11530.2 Vacuolar protein sorting 55 (VPS55) family protein3.2e-5087.25Show/hide
Query:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED
        ACA+Y NWWPMLSALMYV+VPMPC+FFGGGSTQFLISRDGGGWI AAKFLTGASTVGSLAIPIILRHA MI+TGAM IEF SFFIF+CTV+CFHR SL+D
Subjt:  ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLED

Query:  DW
        DW
Subjt:  DW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTTGTGCACTATACAACAATTGGTGGCCTATGTTATCAGCTTTGATGTATGTTCTTGTTCCAATGCCTTGTTTATTTTTTGGAGGAGGGTCCACACAGTTTCTGATTAG
CCGAGATGGTGGAGGATGGATAGGTGCTGCTAAATTCTTGACAGGAGCTTCAACTGTGGGGAGTTTGGCAATTCCTATTATCCTGAGGCATGCTCATATGATCGATACCG
GAGCCATGTTCATAGAGTTCGTTTCCTTCTTCATTTTTGTTTGCACTGTCTTGTGCTTCCACCGTGTTAGCCTTGAAGATGATTGG
mRNA sequenceShow/hide mRNA sequence
GCTTGTGCACTATACAACAATTGGTGGCCTATGTTATCAGCTTTGATGTATGTTCTTGTTCCAATGCCTTGTTTATTTTTTGGAGGAGGGTCCACACAGTTTCTGATTAG
CCGAGATGGTGGAGGATGGATAGGTGCTGCTAAATTCTTGACAGGAGCTTCAACTGTGGGGAGTTTGGCAATTCCTATTATCCTGAGGCATGCTCATATGATCGATACCG
GAGCCATGTTCATAGAGTTCGTTTCCTTCTTCATTTTTGTTTGCACTGTCTTGTGCTTCCACCGTGTTAGCCTTGAAGATGATTGG
Protein sequenceShow/hide protein sequence
ACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW