CuGenDBv2

Gene ID	MS011226
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Genome location	scaffold239:256848..256994
RNA-Seq Expression	MS011226
Synteny	MS011226
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

AEK71423.1 hypothetical chloroplast RF2 [Albizia julibrissin]

9.3e-10

81.63

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Query:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH
        MFHT GFGSITMGSNVRDLV LTNE LSISIIQKK   D TNL R ALH
Subjt:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

ANK78958.1 Ycf2 [Astragalus membranaceus var. membranaceus]

4.2e-10

81.63

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Query:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH
        MFHTKGFGSITMGSNVRDLV LTNE LSISIIQKK   D TN+ R ALH
Subjt:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

YP_009175801.1 hypothetical chloroplast RF21 [Astragalus mongholicus var. nakaianus]

4.2e-10

81.63

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Query:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH
        MFHTKGFGSITMGSNVRDLV LTNE LSISIIQKK   D TN+ R ALH
Subjt:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

YP_009242995.1 Ycf2 [Astragalus mongholicus]

4.2e-10

81.63

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Query:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH
        MFHTKGFGSITMGSNVRDLV LTNE LSISIIQKK   D TN+ R ALH
Subjt:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

YP_009760410.1 Ycf2 [Astragalus gummifer]

4.2e-10

81.63

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Query:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH
        MFHTKGFGSITMGSNVRDLV LTNE LSISIIQKK   D TN+ R ALH
Subjt:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

TrEMBL top hits

e value

%identity

Alignment

A0A0U2L0Y4 Protein Ycf2

2.0e-10

81.63

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Query:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH
        MFHTKGFGSITMGSNVRDLV LTNE LSISIIQKK   D TN+ R ALH
Subjt:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

A0A142G669 Protein Ycf2

2.0e-10

81.63

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Query:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH
        MFHTKGFGSITMGSNVRDLV LTNE LSISIIQKK   D TN+ R ALH
Subjt:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

A0A192ICL4 Protein Ycf2

2.0e-10

81.63

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Query:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH
        MFHTKGFGSITMGSNVRDLV LTNE LSISIIQKK   D TN+ R ALH
Subjt:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

A0A6G9KW07 Protein Ycf2

2.0e-10

81.63

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Query:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH
        MFHTKGFGSITMGSNVRDLV LTNE LSISIIQKK   D TN+ R ALH
Subjt:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

A0A6H0EEA3 Protein Ycf2

4.5e-10

81.63

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Query:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH
        MFHT GFGSITMGSNVRDLV LTNE LSISIIQKK   D TNL R ALH
Subjt:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

SwissProt top hits

e value

%identity

Alignment

B1NWJ3 Protein Ycf2

7.9e-12

77.55

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Query:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH
        MFHT GFGSITMGSNVRDLV LTNE LSISI QKK   D TN+ R ALH
Subjt:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

Q09WV7 Protein Ycf2

2.3e-11

75.51

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Query:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH
        MFHT GFGSITMGSNVRDLV LTNE LSISI QKK   D TN+ R A H
Subjt:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

Q2QD30 Protein Ycf2

1.8e-11

75.51

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Query:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH
        MFHT GFGSITMGSNVRDLV LTNE LSISI Q+K   D TN+ R ALH
Subjt:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

Q49KT6 Protein Ycf2

1.4e-11

77.55

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Query:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH
        MFHT GFGSITMGSNVRDLV LTNE LSISI QKK   D TN  R ALH
Subjt:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

Q9B1K6 Protein Ycf2

7.9e-12

77.55

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Query:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH
        MFHT GFGSIT+GSNV+DLV LTNE LSISIIQKK   D TNL R ALH
Subjt:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

1.2e-10

71.43

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Query:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH
        MFHT GF SITMGS+ RDLV LTNE LSISI QKK   D TN  R ALH
Subjt:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

1.2e-10

71.43

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Query:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH
        MFHT GF SITMGS+ RDLV LTNE LSISI QKK   D TN  R ALH
Subjt:  MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

Sequences

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CDS sequence

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ATGTTTCATACTAAAGGATTTGGTTCCATAACCATGGGTTCAAATGTACGAGATCTTGTAACACTTACTAATGAGACTCTCTCGATTAGTATTATTCAGAAAAAAGAAAG
GAGAGACAACACTAATCTCACTCGACCTGCTCTTCAT

mRNA sequence

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ATGTTTCATACTAAAGGATTTGGTTCCATAACCATGGGTTCAAATGTACGAGATCTTGTAACACTTACTAATGAGACTCTCTCGATTAGTATTATTCAGAAAAAAGAAAG
GAGAGACAACACTAATCTCACTCGACCTGCTCTTCAT

Protein sequence

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MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

MS011226 (gene) of Bitter gourd (TR) v1 genome