; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS011232 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011232
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPoly(A)-specific ribonuclease
Genome locationscaffold239:292654..293487
RNA-Seq ExpressionMS011232
SyntenyMS011232
Gene Ontology termsGO:0006402 - mRNA catabolic process (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0030014 - CCR4-NOT complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domainsIPR006941 - Ribonuclease CAF1
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON97390.1 Ribonuclease [Trema orientale]3.2e-10770.63Show/hide
Query:  PVRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWEF
        P RS+V RSVWS+NL+SEF LIRS++ ++PLISMDTEFPGVVI  D  DP +R  +   +Y VLKANVDRL LIQ+GLTLADEEGNLPD GT + YIWEF
Subjt:  PVRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWEF

Query:  NFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDV
        NF+DFDVA D +A  S+ELL+RQGIDFE NRD GIDSVRFA+L++ SGLVC+D VSW TFHSAYDFGYLVK+LTRR LP++L  FL  V++FFG  VFDV
Subjt:  NFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDV

Query:  KYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI
        K+L ++C +L+GGLDRVCE LNVDR IGKSHQAGSDSL+TL AF+K+REVYFS   L+ YAGVL+GLEI
Subjt:  KYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI

TQD87132.1 hypothetical protein C1H46_027272 [Malus baccata]3.2e-10768.89Show/hide
Query:  PPVRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWE
        P  R I+ RSVWS+NLESEFELIRS+I +FPLISMDTEFPGVV+  DP DP  R      +Y +LKANVDRL LIQVGLTL+D+ GNLPDLGT N+YIWE
Subjt:  PPVRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWE

Query:  FNFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFD
        FNFRDFDVA D +A  S+ELL+RQGIDFE NRD G+DSVRFA L++ SGLVC+D V+WVTFHS YDFGYLVK+LT+R LP++L  FLNYVR+FFG  V+D
Subjt:  FNFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFD

Query:  VKYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI
        VK+L ++C +L+GGLDRVC+ LNV+R  GKSHQAGSDSL+TL AF+++REVYF    +E YAGVL+GLE+
Subjt:  VKYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI

XP_008391953.1 probable CCR4-associated factor 1 homolog 11 [Malus domestica]5.5e-10767.62Show/hide
Query:  MSNSKSLPP----VRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLP
        MS+S   PP     R I+ RSVWS+NLESEFELIRS+I +FPLISMDTEFPGVV+  DP DP  R      +Y +LKANVDRL LIQVGLTL+D+ GNLP
Subjt:  MSNSKSLPP----VRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLP

Query:  DLGTNNVYIWEFNFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNY
        DLGT N+YIWEFNFRDFDVA D +A  S+ELL+RQGIDFE NRD G+DSVRFA L++ SGLVC+D V+WVTFHS YDFGYLVK+LT+R LP++L  FLNY
Subjt:  DLGTNNVYIWEFNFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNY

Query:  VRLFFGPMVFDVKYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI
        VR+FFG  V+DVK+L ++C +L+GGLDRVC+ LNV+R  GKSHQAGSDSL+TL AF+++REVYF    +E YAGVL+GLE+
Subjt:  VRLFFGPMVFDVKYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI

XP_009349767.1 PREDICTED: probable CCR4-associated factor 1 homolog 11 isoform X3 [Pyrus x bretschneideri]9.4e-10767.26Show/hide
Query:  MSNSKSLPP----VRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLP
        MS+S   PP     R I+ RSVWS+NLESEFELIRS+I +FPLISMDTEFPGVV+  DP DP  R      +Y +LKANVDRL LIQVGLTL+D+ GNLP
Subjt:  MSNSKSLPP----VRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLP

Query:  DLGTNNVYIWEFNFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNY
        DLGT N+YIWEFNFRDFDVA D +A  S+ELL+RQGIDFE NRD G+DSVRFA L++ SGLVC+D V+WVTFHS YDFGYLVK+LT+R LP++L  FLNY
Subjt:  DLGTNNVYIWEFNFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNY

Query:  VRLFFGPMVFDVKYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI
        VR+FFG  V+DVK+L ++C +L+GGLDRVC+ LNV R  GKSHQAGSDSL+TL AF+++REVYF    +E YAG+L+GLE+
Subjt:  VRLFFGPMVFDVKYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI

XP_022132359.1 probable CCR4-associated factor 1 homolog 11 [Momordica charantia]1.3e-15698.92Show/hide
Query:  MSNSKSLPPVRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGT
        MSNSKSLPPVRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGT
Subjt:  MSNSKSLPPVRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGT

Query:  NNVYIWEFNFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLF
        NNVYIWEFNFRDFDVAHDPYADSSI LLKRQGIDFEYNRDNGIDSVRFAQLL+GSGLVCSDC+SWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLF
Subjt:  NNVYIWEFNFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLF

Query:  FGPMVFDVKYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEIQ
        FGPMVFDVKYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEIQ
Subjt:  FGPMVFDVKYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEIQ

TrEMBL top hitse value%identityAlignment
A0A2P5D9V9 Poly(A)-specific ribonuclease1.7e-10669.89Show/hide
Query:  PVRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWEF
        P R +V RSVWS+NL+SEF LIRS++ ++PLISMDTEFPGVVI  D  DP +R  +   +Y VLKANVDRL LIQ+GLTLADEEGNLPD GT + YIWEF
Subjt:  PVRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWEF

Query:  NFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDV
        NF+DFDVA D +A  S+ELL+RQGIDFE NRD GIDSV+FA+L++ SGLVC+D VSW TFHSAYDFGYLVK+LTRR LP++L  FL  V++FFG  VFDV
Subjt:  NFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDV

Query:  KYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI
        K+L ++C +L+GGLDRVCE LNVDR IGKSHQAGSDSL+TL AF+K+REVYFS   L+ YAGVL+GLEI
Subjt:  KYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI

A0A2P5FHX6 Poly(A)-specific ribonuclease1.6e-10770.63Show/hide
Query:  PVRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWEF
        P RS+V RSVWS+NL+SEF LIRS++ ++PLISMDTEFPGVVI  D  DP +R  +   +Y VLKANVDRL LIQ+GLTLADEEGNLPD GT + YIWEF
Subjt:  PVRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWEF

Query:  NFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDV
        NF+DFDVA D +A  S+ELL+RQGIDFE NRD GIDSVRFA+L++ SGLVC+D VSW TFHSAYDFGYLVK+LTRR LP++L  FL  V++FFG  VFDV
Subjt:  NFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDV

Query:  KYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI
        K+L ++C +L+GGLDRVCE LNVDR IGKSHQAGSDSL+TL AF+K+REVYFS   L+ YAGVL+GLEI
Subjt:  KYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI

A0A498I4I2 Poly(A)-specific ribonuclease5.9e-10767.86Show/hide
Query:  MSNSKSLPP----VRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLP
        MS+S   PP     R I+ RSVWS+NLESEFELIRS+I +FPLISMDTEFPGVV+  DP DP  R      +Y +LKANVDRL LIQVGLTL+D+ GNLP
Subjt:  MSNSKSLPP----VRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLP

Query:  DLGTNNVYIWEFNFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNY
        DLGT N+YIWEFNFRDFDVA D +A  S+ELL+RQGIDFE NRD G+DSVRFA L++ SGLVC+D V+WVTFHS YDFGYLVK+LT+R LP++L  FLNY
Subjt:  DLGTNNVYIWEFNFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNY

Query:  VRLFFGPMVFDVKYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLE
        VR+FFG  V+DVK+L ++C +L+GGLDRVC+ LNV+R  GKSHQAGSDSL+TL AF+++REVYF    +E YAGVL+GLE
Subjt:  VRLFFGPMVFDVKYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLE

A0A540LLH9 Poly(A)-specific ribonuclease1.6e-10768.89Show/hide
Query:  PPVRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWE
        P  R I+ RSVWS+NLESEFELIRS+I +FPLISMDTEFPGVV+  DP DP  R      +Y +LKANVDRL LIQVGLTL+D+ GNLPDLGT N+YIWE
Subjt:  PPVRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWE

Query:  FNFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFD
        FNFRDFDVA D +A  S+ELL+RQGIDFE NRD G+DSVRFA L++ SGLVC+D V+WVTFHS YDFGYLVK+LT+R LP++L  FLNYVR+FFG  V+D
Subjt:  FNFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFD

Query:  VKYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI
        VK+L ++C +L+GGLDRVC+ LNV+R  GKSHQAGSDSL+TL AF+++REVYF    +E YAGVL+GLE+
Subjt:  VKYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI

A0A6J1BSV0 Poly(A)-specific ribonuclease6.3e-15798.92Show/hide
Query:  MSNSKSLPPVRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGT
        MSNSKSLPPVRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGT
Subjt:  MSNSKSLPPVRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGT

Query:  NNVYIWEFNFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLF
        NNVYIWEFNFRDFDVAHDPYADSSI LLKRQGIDFEYNRDNGIDSVRFAQLL+GSGLVCSDC+SWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLF
Subjt:  NNVYIWEFNFRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLF

Query:  FGPMVFDVKYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEIQ
        FGPMVFDVKYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEIQ
Subjt:  FGPMVFDVKYLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEIQ

SwissProt top hitse value%identityAlignment
Q9FMS6 Probable CCR4-associated factor 1 homolog 119.2e-8960.82Show/hide
Query:  IVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLG--TNNVYIWEFNF
        IV R VW+ NLESEF+LIR I+ ++P ISMDTEFPGV+  +D     +RR      Y +LK+NVD L LIQVGLTL+D +GNLPDLG   N  YIWEFNF
Subjt:  IVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLG--TNNVYIWEFNF

Query:  RDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVKY
        RDFDV  DP+A  SIELL+R GIDFE NR  G++S RFA+L++ SGL+C++ VSWVTFHSAYDFGYLVKILTRR LP  L  FL  +R FFG  V+DVK+
Subjt:  RDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVKY

Query:  LMKYC-PNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI
        +M++C   L+GGLDRV   L V+R +GK HQAGSDSL+T +AF++MR++YF     E +AGVL+GLE+
Subjt:  LMKYC-PNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI

Q9LEU4 Probable CCR4-associated factor 1 homolog 101.6e-7252.81Show/hide
Query:  SIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWEFNFR
        SI+ R VW  NL  EF LIR I+ +F  I+MDTEFPGVV+    A  K      + NY  LK NVD LKLIQVGLT +DE GNLP  GT+   IW+FNFR
Subjt:  SIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWEFNFR

Query:  DFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVKYL
        +F++  D YA  SIELL++ GIDF+ N + GID VRF +L++ SG+V +D +SWVTFH  YDFGYLVK+LT + LP     F   + ++F P V+D+K+L
Subjt:  DFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVKYL

Query:  MKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEIQ
        M +C  L GGL+R+ E++ V+R +G  HQAGSDSL+TL +FRK++E YF   S E Y GVL+GL ++
Subjt:  MKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEIQ

Q9LXM2 Probable CCR4-associated factor 1 homolog 91.1e-8660.59Show/hide
Query:  SIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLG--TNNVYIWEFN
        ++VTR VW+ NLESEFELI  II ++P ISMDTEFPGV+  SD     +R T  +  Y +LKANVD L LIQVGLTL+D  GNLPDLG   +  +IWEFN
Subjt:  SIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLG--TNNVYIWEFN

Query:  FRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVK
        FRDFDVA D +A  SIELL+RQGIDFE N  +G++S RFA+L++ SGLVC++ VSWVTFHSAYDFGYL+KILTRR LP  L  F   +R+ FG  V+DVK
Subjt:  FRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVK

Query:  YLMKYCP-NLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI
        ++MK+C   L GGLDRV   L V+R +GK HQAGSDSL+T  AF++MR++YF     E +AGVL+GLE+
Subjt:  YLMKYCP-NLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI

Q9S9P2 Probable CCR4-associated factor 1 homolog 24.0e-7652.81Show/hide
Query:  SIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIR--RTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWEFN
        +I  R VW++NLE E  LI   I +FP ++MDTEFPG+V  +  A+P         E NY  LKANV+ LKLIQ+GLTL+DE+GNLP  GTN   IW+FN
Subjt:  SIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIR--RTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWEFN

Query:  FRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVK
        FR+F+V  D +A  SIELL++  ID E N + G+D+ RFA+LL+GSG+V +D + WVTFH  YDFGYL+K+L+ + LPE++  F + +  FF P+V+D+K
Subjt:  FRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVK

Query:  YLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLE
        YLM +C NL+GGL+++ E+L V R +G SHQAGSDSL+TLR F KM+E +F+ + L+ Y+G LFGL+
Subjt:  YLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLE

Q9SKZ2 Probable CCR4-associated factor 1 homolog 72.0e-7552.99Show/hide
Query:  SIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVY-IWEFNF
        SI  R VW++NLESE  LIR ++ +FP ++MDTEFPG+V           +T  E +Y  LK NV+ LK+IQ+GLT +DE+GNLP  GT+N Y IW+FNF
Subjt:  SIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVY-IWEFNF

Query:  RDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVKY
        R+FD+  D YA  SIELL++ GIDF  N + GIDS RFA+LL+ SG+V ++ V WVTFHS YDFGYL+K+LT + LPE   GF   + ++F P V+D+K+
Subjt:  RDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVKY

Query:  LMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEIQ
        LMK+C +LHGGL+++ E+L+V+R +G  HQAGSDSL+T   FRK++E +F   S+E Y+GVL+GL ++
Subjt:  LMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEIQ

Arabidopsis top hitse value%identityAlignment
AT1G15920.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.8e-7752.81Show/hide
Query:  SIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIR--RTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWEFN
        +I  R VW++NLE E  LI   I +FP ++MDTEFPG+V  +  A+P         E NY  LKANV+ LKLIQ+GLTL+DE+GNLP  GTN   IW+FN
Subjt:  SIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIR--RTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWEFN

Query:  FRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVK
        FR+F+V  D +A  SIELL++  ID E N + G+D+ RFA+LL+GSG+V +D + WVTFH  YDFGYL+K+L+ + LPE++  F + +  FF P+V+D+K
Subjt:  FRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVK

Query:  YLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLE
        YLM +C NL+GGL+++ E+L V R +G SHQAGSDSL+TLR F KM+E +F+ + L+ Y+G LFGL+
Subjt:  YLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLE

AT1G15920.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.8e-7752.81Show/hide
Query:  SIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIR--RTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWEFN
        +I  R VW++NLE E  LI   I +FP ++MDTEFPG+V  +  A+P         E NY  LKANV+ LKLIQ+GLTL+DE+GNLP  GTN   IW+FN
Subjt:  SIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIR--RTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWEFN

Query:  FRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVK
        FR+F+V  D +A  SIELL++  ID E N + G+D+ RFA+LL+GSG+V +D + WVTFH  YDFGYL+K+L+ + LPE++  F + +  FF P+V+D+K
Subjt:  FRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVK

Query:  YLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLE
        YLM +C NL+GGL+++ E+L V R +G SHQAGSDSL+TLR F KM+E +F+ + L+ Y+G LFGL+
Subjt:  YLMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLE

AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-7652.99Show/hide
Query:  SIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVY-IWEFNF
        SI  R VW++NLESE  LIR ++ +FP ++MDTEFPG+V           +T  E +Y  LK NV+ LK+IQ+GLT +DE+GNLP  GT+N Y IW+FNF
Subjt:  SIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVY-IWEFNF

Query:  RDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVKY
        R+FD+  D YA  SIELL++ GIDF  N + GIDS RFA+LL+ SG+V ++ V WVTFHS YDFGYL+K+LT + LPE   GF   + ++F P V+D+K+
Subjt:  RDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVKY

Query:  LMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEIQ
        LMK+C +LHGGL+++ E+L+V+R +G  HQAGSDSL+T   FRK++E +F   S+E Y+GVL+GL ++
Subjt:  LMKYCPNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEIQ

AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.0e-8860.59Show/hide
Query:  SIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLG--TNNVYIWEFN
        ++VTR VW+ NLESEFELI  II ++P ISMDTEFPGV+  SD     +R T  +  Y +LKANVD L LIQVGLTL+D  GNLPDLG   +  +IWEFN
Subjt:  SIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLG--TNNVYIWEFN

Query:  FRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVK
        FRDFDVA D +A  SIELL+RQGIDFE N  +G++S RFA+L++ SGLVC++ VSWVTFHSAYDFGYL+KILTRR LP  L  F   +R+ FG  V+DVK
Subjt:  FRDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVK

Query:  YLMKYCP-NLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI
        ++MK+C   L GGLDRV   L V+R +GK HQAGSDSL+T  AF++MR++YF     E +AGVL+GLE+
Subjt:  YLMKYCP-NLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI

AT5G22250.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.5e-9060.82Show/hide
Query:  IVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLG--TNNVYIWEFNF
        IV R VW+ NLESEF+LIR I+ ++P ISMDTEFPGV+  +D     +RR      Y +LK+NVD L LIQVGLTL+D +GNLPDLG   N  YIWEFNF
Subjt:  IVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLG--TNNVYIWEFNF

Query:  RDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVKY
        RDFDV  DP+A  SIELL+R GIDFE NR  G++S RFA+L++ SGL+C++ VSWVTFHSAYDFGYLVKILTRR LP  L  FL  +R FFG  V+DVK+
Subjt:  RDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVKY

Query:  LMKYC-PNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI
        +M++C   L+GGLDRV   L V+R +GK HQAGSDSL+T +AF++MR++YF     E +AGVL+GLE+
Subjt:  LMKYC-PNLHGGLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCAACTCTAAATCGCTGCCGCCTGTTCGGTCCATTGTTACCCGATCCGTGTGGTCTAACAATCTTGAATCCGAGTTCGAGCTGATCCGGTCCATTATACACGAGTT
TCCGCTGATTTCTATGGACACCGAATTTCCCGGCGTGGTTATACATTCAGATCCGGCAGATCCGAAAATTCGGCGAACTCGACTGGAGACCAACTACTTCGTTCTAAAGG
CCAATGTTGATCGGCTCAAATTGATCCAGGTTGGGCTTACGCTCGCCGATGAGGAGGGTAATCTTCCGGATTTGGGCACGAACAACGTCTATATTTGGGAATTTAATTTT
AGGGATTTCGATGTGGCACATGATCCATACGCTGACAGTTCGATTGAGTTGTTGAAGCGGCAGGGCATTGATTTTGAGTACAACCGAGACAACGGAATCGATTCTGTTCG
TTTCGCCCAATTGTTGATTGGGTCAGGACTCGTGTGCAGCGATTGTGTTTCTTGGGTGACCTTTCATAGCGCTTACGATTTTGGCTACCTAGTAAAGATACTAACCCGAA
GGGCTCTACCAGAAGATTTGTTAGGTTTCCTAAATTATGTGAGGTTGTTCTTTGGGCCTATGGTTTTCGACGTGAAGTACTTGATGAAATACTGCCCCAATCTGCACGGC
GGCCTCGACAGGGTTTGTGAAATTCTCAATGTGGACCGTGAAATCGGGAAGAGTCATCAGGCTGGCTCAGATAGCTTGGTGACTTTGCGGGCATTCCGGAAGATGAGGGA
AGTATATTTTAGCAATACTAGTCTTGAGGTTTATGCTGGTGTTTTGTTTGGTTTAGAGATTCAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCAACTCTAAATCGCTGCCGCCTGTTCGGTCCATTGTTACCCGATCCGTGTGGTCTAACAATCTTGAATCCGAGTTCGAGCTGATCCGGTCCATTATACACGAGTT
TCCGCTGATTTCTATGGACACCGAATTTCCCGGCGTGGTTATACATTCAGATCCGGCAGATCCGAAAATTCGGCGAACTCGACTGGAGACCAACTACTTCGTTCTAAAGG
CCAATGTTGATCGGCTCAAATTGATCCAGGTTGGGCTTACGCTCGCCGATGAGGAGGGTAATCTTCCGGATTTGGGCACGAACAACGTCTATATTTGGGAATTTAATTTT
AGGGATTTCGATGTGGCACATGATCCATACGCTGACAGTTCGATTGAGTTGTTGAAGCGGCAGGGCATTGATTTTGAGTACAACCGAGACAACGGAATCGATTCTGTTCG
TTTCGCCCAATTGTTGATTGGGTCAGGACTCGTGTGCAGCGATTGTGTTTCTTGGGTGACCTTTCATAGCGCTTACGATTTTGGCTACCTAGTAAAGATACTAACCCGAA
GGGCTCTACCAGAAGATTTGTTAGGTTTCCTAAATTATGTGAGGTTGTTCTTTGGGCCTATGGTTTTCGACGTGAAGTACTTGATGAAATACTGCCCCAATCTGCACGGC
GGCCTCGACAGGGTTTGTGAAATTCTCAATGTGGACCGTGAAATCGGGAAGAGTCATCAGGCTGGCTCAGATAGCTTGGTGACTTTGCGGGCATTCCGGAAGATGAGGGA
AGTATATTTTAGCAATACTAGTCTTGAGGTTTATGCTGGTGTTTTGTTTGGTTTAGAGATTCAG
Protein sequenceShow/hide protein sequence
MSNSKSLPPVRSIVTRSVWSNNLESEFELIRSIIHEFPLISMDTEFPGVVIHSDPADPKIRRTRLETNYFVLKANVDRLKLIQVGLTLADEEGNLPDLGTNNVYIWEFNF
RDFDVAHDPYADSSIELLKRQGIDFEYNRDNGIDSVRFAQLLIGSGLVCSDCVSWVTFHSAYDFGYLVKILTRRALPEDLLGFLNYVRLFFGPMVFDVKYLMKYCPNLHG
GLDRVCEILNVDREIGKSHQAGSDSLVTLRAFRKMREVYFSNTSLEVYAGVLFGLEIQ