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MS011298 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011298
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L17
Genome locationscaffold239:736029..738309
RNA-Seq ExpressionMS011298
SyntenyMS011298
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000456 - Ribosomal protein L17
IPR036373 - Ribosomal protein L17 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132421.1 uncharacterized protein LOC111005280 [Momordica charantia]5.1e-8199.37Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDSEV
        VGDAAPMAYIEFIDRENELRQSKPPNPQP QKAPLDPWTRSRLSKQFAPPKEIKSDSEV
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDSEV

XP_022947437.1 uncharacterized protein LOC111451296 [Cucurbita moschata]8.4e-7694.27Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGKE SLCA+R AAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDS
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAP+DPWTRSRLSKQFAPPKEIKSD+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDS

XP_022979157.1 uncharacterized protein LOC111478877 [Cucurbita maxima]4.7e-7996.23Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRP  HRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKE SLCAAR AAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDSEV
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAP+DPWTRSRLSKQFAPPKEIKSDSE+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDSEV

XP_023533917.1 uncharacterized protein LOC111795618 [Cucurbita pepo subsp. pepo]3.4e-7794.34Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGKE SLCA+R AAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDSEV
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAP+DPWTRSRLSKQFAPPKEIKSDSE+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDSEV

XP_038880926.1 50S ribosomal protein L17 [Benincasa hispida]4.9e-7693.08Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGR T HRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQFGKE +LCAARRAAAFVRGD VLHKLFTE+AYRYKDRAGGYTR LRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDSEV
        VGDAAPMAYIEFIDRENELRQSKPPNP PPQ+APLDPWTRSRLSKQFAPPKEIKSDSE+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDSEV

TrEMBL top hitse value%identityAlignment
A0A2N9GBE6 Uncharacterized protein8.2e-7793.08Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKL RPTGHRMSM RTMVSQLVKHERIETTVAKAKEIRRLADNMVQ GKE SLCAARRAAAFVRGDDV+HKLFTELAYRYKDRAGGYTR+LRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDSEV
        VGDAAPMAYIEFIDRENELRQSKPP PQPPQKAPLDPWTRSRLSKQFAPPKE +S+SE+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDSEV

A0A5N6QHZ8 Uncharacterized protein1.2e-7591.19Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKL RPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQ GKE SLCAARRAAAFVRGDDV+HKLFTELAYRYKDRAGGYTR+LRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDSEV
        VGDAAPMAYIEFIDR+NELRQSKPP PQPPQ+APLDPWTRSRL++QFAPPKE KS+ E+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDSEV

A0A6J1BS83 uncharacterized protein LOC1110052802.5e-8199.37Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDSEV
        VGDAAPMAYIEFIDRENELRQSKPPNPQP QKAPLDPWTRSRLSKQFAPPKEIKSDSEV
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDSEV

A0A6J1G6G2 uncharacterized protein LOC1114512964.0e-7694.27Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGKE SLCA+R AAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDS
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAP+DPWTRSRLSKQFAPPKEIKSD+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDS

A0A6J1IN09 uncharacterized protein LOC1114788772.3e-7996.23Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRP  HRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKE SLCAAR AAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDSEV
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAP+DPWTRSRLSKQFAPPKEIKSDSE+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDSEV

SwissProt top hitse value%identityAlignment
A0L5Z9 50S ribosomal protein L175.2e-2853.1Show/hide
Query:  RKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGD-DVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGD
        R+L R T HR +M++ M+  L KHERIETTV +AKE+R +A+ ++  GK   L A R+A + + GD +V+HKLFT+LA R KDR GGYTR+L+TR R GD
Subjt:  RKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGD-DVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGD

Query:  AAPMAYIEFIDRE
         APM++IE ++R+
Subjt:  AAPMAYIEFIDRE

A1ALW8 50S ribosomal protein L173.7e-2653.57Show/hide
Query:  RKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA
        R+LGR T HR +M R MV+ L  HE+I TT AKAKEIR +A+ M+  GK   L + R AAAF+R   V+ KLF+ +A RYK+RAGGYTR+++   R GDA
Subjt:  RKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA

Query:  APMAYIEFIDRE
        APM+ IE ++ E
Subjt:  APMAYIEFIDRE

B3E858 50S ribosomal protein L172.8e-2653.64Show/hide
Query:  RKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA
        R+LGR T HR++M R MV+ L+ HERI TT AKAKEIR +A+ M+  GK   L A R+AAA++R   V+ KLF+ +A RYKDRAGGYTR+++   R+GDA
Subjt:  RKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA

Query:  APMAYIEFID
        A ++ IE ++
Subjt:  APMAYIEFID

Q749B4 50S ribosomal protein L171.7e-2643.24Show/hide
Query:  RKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA
        R+LGR T HR++M R MV+ L  HERI TT AKAKE+R +A+ M+  GK   L A R+AA+++R   V+ KLF+ +A RYK+R GGYTR+++  IR GD 
Subjt:  RKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA

Query:  APMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKE
        AP++ IE ++ + E +  K     P Q     P          A P+E
Subjt:  APMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKE

Q8RE45 50S ribosomal protein L177.5e-2750.91Show/hide
Query:  FRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGD
        +RKLGR   HR +ML+ M   L+K ERIETTV +AKE+R+ A+ M+ FGK+N+L + R A AF+R ++V+ K+F E+A +Y +R GGYTR+++T +R GD
Subjt:  FRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGD

Query:  AAPMAYIEFI
        +A MA IE +
Subjt:  AAPMAYIEFI

Arabidopsis top hitse value%identityAlignment
AT3G54210.1 Ribosomal protein L17 family protein1.3e-2145.37Show/hide
Query:  KLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAA
        KL RP   R ++LR + +QL+KH RI+TT A+A  +R+  D M+   K+ SL   R+A  ++    ++H LF E+  RY +R GGYTR++RT  R GD A
Subjt:  KLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAA

Query:  PMAYIEFI
        PMAYIE +
Subjt:  PMAYIEFI

AT5G09770.1 Ribosomal protein L17 family protein6.4e-7486.88Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRP GHRMSMLRTMVSQLVKHERIETTV KAKE+RRLADNM+Q GKE SL AARRAA FVRGDDVLHK+FTELA+RYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIK-SDSEV
        VGDAAPMAYIEFIDRENELRQSKP  PQPPQ+ PLDPW RSRL++QFAPPKE K  DSE+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIK-SDSEV

AT5G64650.1 Ribosomal protein L17 family protein1.2e-7284.38Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRP GHRMSMLRTMVSQLV+HERIETTV KAKE+RRLADNM+Q GKE SL AARRAA FVRGDDVLHK+FTELA+RYKDRAGGYTR+LRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIK-SDSEV
        VGDAAPMAYIEFIDRENELRQSKP  PQPP + PLDPW RSRL++Q+APPKE K SDS++
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIK-SDSEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAAGTTCAGAAAGCTTGGTCGACCTACAGGTCACCGGATGTCCATGCTGAGAACAATGGTTTCTCAGCTGGTGAAGCACGAGCGCATTGAGACTACTGTTGCCAA
GGCGAAAGAAATTCGACGGCTTGCTGATAATATGGTTCAATTTGGAAAAGAGAATTCCCTTTGTGCTGCAAGGCGTGCTGCTGCATTTGTGCGAGGCGACGATGTCCTTC
ACAAACTATTCACGGAATTGGCTTATCGATACAAAGATAGAGCTGGTGGATATACAAGACTTCTTCGGACTCGTATACGTGTTGGTGATGCTGCACCAATGGCTTATATA
GAATTTATTGATAGAGAAAATGAGCTGAGGCAGTCCAAGCCTCCAAATCCTCAACCACCACAGAAGGCTCCATTGGATCCTTGGACAAGATCACGGCTTAGCAAGCAGTT
CGCACCCCCCAAAGAGATCAAATCTGACTCTGAAGTG
mRNA sequenceShow/hide mRNA sequence
ATGACGAAGTTCAGAAAGCTTGGTCGACCTACAGGTCACCGGATGTCCATGCTGAGAACAATGGTTTCTCAGCTGGTGAAGCACGAGCGCATTGAGACTACTGTTGCCAA
GGCGAAAGAAATTCGACGGCTTGCTGATAATATGGTTCAATTTGGAAAAGAGAATTCCCTTTGTGCTGCAAGGCGTGCTGCTGCATTTGTGCGAGGCGACGATGTCCTTC
ACAAACTATTCACGGAATTGGCTTATCGATACAAAGATAGAGCTGGTGGATATACAAGACTTCTTCGGACTCGTATACGTGTTGGTGATGCTGCACCAATGGCTTATATA
GAATTTATTGATAGAGAAAATGAGCTGAGGCAGTCCAAGCCTCCAAATCCTCAACCACCACAGAAGGCTCCATTGGATCCTTGGACAAGATCACGGCTTAGCAAGCAGTT
CGCACCCCCCAAAGAGATCAAATCTGACTCTGAAGTG
Protein sequenceShow/hide protein sequence
MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYI
EFIDRENELRQSKPPNPQPPQKAPLDPWTRSRLSKQFAPPKEIKSDSEV