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MS011303 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011303
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationscaffold239:778477..778734
RNA-Seq ExpressionMS011303
SyntenyMS011303
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
GO:0016746 - transferase activity, transferring acyl groups (molecular function)
InterPro domainsIPR003613 - U box domain
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7027134.1 U-box domain-containing protein 27, partial [Cucurbita argyrosperma subsp. argyrosperma]9.9e-3990.7Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVSASL
        PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQ+WLDNGNNTCPATMQ+L TKEFVPNHNLHRLIQIWSDSL  RVHSP+SSPVS S+
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVSASL

XP_022963355.1 U-box domain-containing protein 27-like [Cucurbita moschata]9.9e-3990.7Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVSASL
        PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQ+WLDNGNNTCPATMQ+L TKEFVPNHNLHRLIQIWSDSL  RVHSP+SSPVS S+
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVSASL

XP_023003068.1 U-box domain-containing protein 27-like [Cucurbita maxima]1.2e-3991.86Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVSASL
        PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQ+WLDNGNNTCPATMQ+L TKEFVPNHNLHRLIQIWSDSL HRVHSP+SSPVS S+
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVSASL

XP_023518003.1 U-box domain-containing protein 27-like [Cucurbita pepo subsp. pepo]1.2e-3991.86Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVSASL
        PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQ+WLDNGNNTCPATMQ+L TKEFVPNHNLHRLIQIWSDSL HRVHSP+SSPVS S+
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVSASL

XP_023543245.1 U-box domain-containing protein 27 [Cucurbita pepo subsp. pepo]2.9e-3891.76Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVSAS
        PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQ+WLDNGNNTCPATMQVL TKEFVPNHNLHRLIQIWSDSL  R+HSP+SSPVS S
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVSAS

TrEMBL top hitse value%identityAlignment
A0A5A7SMT0 RING-type E3 ubiquitin transferase7.1e-3591.14Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPES
        PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQ+WLDNGNNTCPATMQVL TKEFVPNHNLHRLIQIWSDS   R+HSP S
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPES

A0A6J1GDY4 RING-type E3 ubiquitin transferase1.8e-3892.77Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVS
        PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQ+WLDNGNNTCPATMQVL TKEFVPNHNLHRLIQIWSDSL  R+HSP+SSPVS
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVS

A0A6J1HHS1 RING-type E3 ubiquitin transferase4.8e-3990.7Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVSASL
        PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQ+WLDNGNNTCPATMQ+L TKEFVPNHNLHRLIQIWSDSL  RVHSP+SSPVS S+
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVSASL

A0A6J1IPD9 RING-type E3 ubiquitin transferase1.8e-3892.77Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVS
        PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQ+WLDNGNNTCPATMQVL TKEFVPNHNLHRLIQIWSDSL  R+HSP+SSPVS
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVS

A0A6J1KVE8 RING-type E3 ubiquitin transferase5.6e-4091.86Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVSASL
        PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQ+WLDNGNNTCPATMQ+L TKEFVPNHNLHRLIQIWSDSL HRVHSP+SSPVS S+
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVSASL

SwissProt top hitse value%identityAlignment
Q5PNY6 U-box domain-containing protein 211.3e-1746.91Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIW----SDSLLHRVHSP
        P +F+CPIS+D+MK PV + TG+TYDR SI+ W+++GN TCP T  VL T + +PNH + ++IQ W       L+ R+ +P
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIW----SDSLLHRVHSP

Q9FLF4 U-box domain-containing protein 271.9e-2978.08Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHR
        P+ FRCPISLDVMKSPVSLCTGVTYDR+SIQRWLD GNNTCPATMQ+L  K+F+PN  L RLI+IWSDS+  R
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHR

Q9LSA6 U-box domain-containing protein 293.3e-2972.94Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSL--LHRVHSPESSPVS
        PS F+CPISLDVM+SPVSLCTGVTYDR+SIQRWLD GNNTCPATMQ+L TK+FVPN  L RLI IWSDS+   H   SP  +P S
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSL--LHRVHSPESSPVS

Q9LXE3 U-box domain-containing protein 283.6e-2875.31Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRV--HSPES
        P  F+CPISLDVMKSPVSL TGVTYDR SIQRWLD+GNNTCPATMQ+L  KEFVPN  LHRLI  WSDS+  R    SPES
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRV--HSPES

Q9SVC6 E3 ubiquitin-protein ligase PUB226.5e-1758.21Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNG-NNTCPATMQVLHTKEFVPNHNLHRLIQIW
        PS F CPISLD+MK PV + TG+TYDR SI++WL +G  N+CP T QV+   +  PNH L RLIQ W
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNG-NNTCPATMQVLHTKEFVPNHNLHRLIQIW

Arabidopsis top hitse value%identityAlignment
AT3G18710.1 plant U-box 292.3e-3072.94Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSL--LHRVHSPESSPVS
        PS F+CPISLDVM+SPVSLCTGVTYDR+SIQRWLD GNNTCPATMQ+L TK+FVPN  L RLI IWSDS+   H   SP  +P S
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSL--LHRVHSPESSPVS

AT3G52450.1 plant U-box 224.6e-1858.21Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNG-NNTCPATMQVLHTKEFVPNHNLHRLIQIW
        PS F CPISLD+MK PV + TG+TYDR SI++WL +G  N+CP T QV+   +  PNH L RLIQ W
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNG-NNTCPATMQVLHTKEFVPNHNLHRLIQIW

AT5G09800.1 ARM repeat superfamily protein2.6e-2975.31Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRV--HSPES
        P  F+CPISLDVMKSPVSL TGVTYDR SIQRWLD+GNNTCPATMQ+L  KEFVPN  LHRLI  WSDS+  R    SPES
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRV--HSPES

AT5G37490.1 ARM repeat superfamily protein9.2e-1946.91Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIW----SDSLLHRVHSP
        P +F+CPIS+D+MK PV + TG+TYDR SI+ W+++GN TCP T  VL T + +PNH + ++IQ W       L+ R+ +P
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIW----SDSLLHRVHSP

AT5G64660.1 CYS, MET, PRO, and GLY protein 21.4e-3078.08Show/hide
Query:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHR
        P+ FRCPISLDVMKSPVSLCTGVTYDR+SIQRWLD GNNTCPATMQ+L  K+F+PN  L RLI+IWSDS+  R
Subjt:  PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCGAGCGATTTCCGATGTCCGATCTCGTTGGATGTGATGAAATCCCCTGTAAGTCTCTGCACCGGAGTCACCTACGATCGTTCCAGTATCCAGCGATGGCTCGACAATGG
AAACAACACTTGCCCCGCCACGATGCAGGTCCTCCACACCAAGGAGTTCGTCCCCAATCACAATCTCCACCGTCTCATTCAGATATGGTCCGACTCGCTCCTCCACCGAG
TCCACTCGCCCGAATCCTCTCCTGTTTCTGCCTCCCTC
mRNA sequenceShow/hide mRNA sequence
CCGAGCGATTTCCGATGTCCGATCTCGTTGGATGTGATGAAATCCCCTGTAAGTCTCTGCACCGGAGTCACCTACGATCGTTCCAGTATCCAGCGATGGCTCGACAATGG
AAACAACACTTGCCCCGCCACGATGCAGGTCCTCCACACCAAGGAGTTCGTCCCCAATCACAATCTCCACCGTCTCATTCAGATATGGTCCGACTCGCTCCTCCACCGAG
TCCACTCGCCCGAATCCTCTCCTGTTTCTGCCTCCCTC
Protein sequenceShow/hide protein sequence
PSDFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLLHRVHSPESSPVSASL