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MS011317 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011317
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionWD_REPEATS_REGION domain-containing protein
Genome locationscaffold239:941428..941514
RNA-Seq ExpressionMS011317
SyntenyMS011317
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR011047 - Quinoprotein alcohol dehydrogenase-like superfamily
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141980.1 WD repeat domain-containing protein 83 [Cucumis sativus]9.8e-0796.55Show/hide
Query:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
        S VTSVSYHPKDKCMITASVDGTIRVWKT
Subjt:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
XP_008440996.1 PREDICTED: WD repeat domain-containing protein 83 [Cucumis melo]9.8e-0796.55Show/hide
Query:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
        S VTSVSYHPKDKCMITASVDGTIRVWKT
Subjt:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
XP_022133372.1 WD repeat domain-containing protein 83 [Momordica charantia]9.8e-0796.55Show/hide
Query:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
        S VTSVSYHPKDKCMITASVDGTIRVWKT
Subjt:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
XP_022949610.1 WD repeat domain-containing protein 83 [Cucurbita moschata]9.8e-0796.55Show/hide
Query:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
        S VTSVSYHPKDKCMITASVDGTIRVWKT
Subjt:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
XP_022978013.1 WD repeat domain-containing protein 83 [Cucurbita maxima]2.8e-0693.1Show/hide
Query:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
        S VTSVSYHPKD+CMITASVDGTIRVWKT
Subjt:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
TrEMBL top hitse value%identityAlignment
A0A0A0KFA7 WD_REPEATS_REGION domain-containing protein4.7e-0796.55Show/hide
Query:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
        S VTSVSYHPKDKCMITASVDGTIRVWKT
Subjt:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
A0A1S3B1Y9 WD repeat domain-containing protein 834.7e-0796.55Show/hide
Query:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
        S VTSVSYHPKDKCMITASVDGTIRVWKT
Subjt:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
A0A6J1BWH4 WD repeat domain-containing protein 834.7e-0796.55Show/hide
Query:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
        S VTSVSYHPKDKCMITASVDGTIRVWKT
Subjt:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
A0A6J1GD83 WD repeat domain-containing protein 834.7e-0796.55Show/hide
Query:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
        S VTSVSYHPKDKCMITASVDGTIRVWKT
Subjt:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
A0A6J1IRS5 WD repeat domain-containing protein 831.4e-0693.1Show/hide
Query:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
        S VTSVSYHPKD+CMITASVDGTIRVWKT
Subjt:  SQVTSVSYHPKDKCMITASVDGTIRVWKT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G64730.1 Transducin/WD40 repeat-like superfamily protein2.5e-0884.62Show/hide
Query:  VTSVSYHPKDKCMITASVDGTIRVWK
        VTSVSYHPK+ CM+T+SVDGTIRVWK
Subjt:  VTSVSYHPKDKCMITASVDGTIRVWK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCACAGGTGACAAGTGTGAGTTACCACCCGAAAGATAAATGTATGATAACTGCATCGGTAGATGGGACGATTCGGGTTTGGAAGACA
mRNA sequenceShow/hide mRNA sequence
TCACAGGTGACAAGTGTGAGTTACCACCCGAAAGATAAATGTATGATAACTGCATCGGTAGATGGGACGATTCGGGTTTGGAAGACA
Protein sequenceShow/hide protein sequence
SQVTSVSYHPKDKCMITASVDGTIRVWKT