CuGenDBv2

Gene ID	MS011344
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP synthase 24 kDa subunit
Genome location	scaffold239:1189912..1192827
RNA-Seq Expression	MS011344
Synteny	MS011344
Gene Ontology terms	GO:0009555 - pollen development (biological process)
InterPro domains	IPR031432 - MALE GAMETOPHYTE DEFECTIVE 1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004141966.1 probable ATP synthase 24 kDa subunit, mitochondrial [Cucumis sativus]

1.1e-78

94.01

Show/hide

Query:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ
        QVLGSQSILHQGHA PVRHFAKEAA PALKGDEMLKNIFLEVKKKFETAL VF+KEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ
Subjt:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ

Query:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK
        DIPDAR+YLL LK+IRIKRGL+D+LGAEA+MFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK
Subjt:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK

XP_022132532.1 probable ATP synthase 24 kDa subunit, mitochondrial [Momordica charantia]

8.8e-84

100

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Query:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ
        QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ
Subjt:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ

Query:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK
        DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK
Subjt:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK

XP_022977838.1 probable ATP synthase 24 kDa subunit, mitochondrial [Cucurbita maxima]

6.9e-81

95.21

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Query:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ
        QVLGSQSILHQGHAIPVRHFAKEAARPALKGD+MLKNIFLEVKKKFETA+DVFRKEKITIDPDDPAAVAQYAKVMK+AREKADLFSE+QRIKYTIQTRTQ
Subjt:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ

Query:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK
        DIPDARTYLLTLKDIRIKR L+DELGAEA+MFDALEKVEKELKKPLLRNDKKGMS+LMAEFDKINQK
Subjt:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK

XP_023544831.1 probable ATP synthase 24 kDa subunit, mitochondrial [Cucurbita pepo subsp. pepo]

1.3e-79

94.01

Show/hide

Query:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ
        QVLG  SILHQGHAIPVRHFA+EAARPALKGDEMLKNIFLEVKKKFETA+DVFRKEKITIDPDDPAAVAQYAKVMK+AREKADLFSE+QRIKYTIQTRTQ
Subjt:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ

Query:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK
        DIPDARTYLLTLKDIRIKR L+DELGAEA+MFDALEKVEKELKKPLLRNDKKGMS+LMAEFDKINQK
Subjt:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK

XP_038881119.1 probable ATP synthase 24 kDa subunit, mitochondrial [Benincasa hispida]

9.1e-81

94.61

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Query:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ
        QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMK+AREKADLFSESQRIKYTIQT+TQ
Subjt:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ

Query:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK
        DIPDAR+YLL LKDIRIKRGL+D+LGAEA+MFDALEKVEKELKKPL+RNDKKGMS+LMAEFDKINQK
Subjt:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KKY9 Uncharacterized protein

5.4e-79

94.01

Show/hide

Query:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ
        QVLGSQSILHQGHA PVRHFAKEAA PALKGDEMLKNIFLEVKKKFETAL VF+KEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ
Subjt:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ

Query:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK
        DIPDAR+YLL LK+IRIKRGL+D+LGAEA+MFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK
Subjt:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK

A0A5D3CNN3 Putative ATP synthase 24 kDa subunit

2.0e-78

92.22

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Query:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ
        QVLGSQSILHQGHA PVRHFAKEAARPALKGDEMLK+IFLEVKKKFETAL VF+KEKITIDPDDPAAVAQYAKVMK+AREKADLFSESQRIKYTIQTRTQ
Subjt:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ

Query:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK
        DIPDAR+YLL L++IRIKRGL+D+LGAEA+MFDALEKVEKELKKPLLRNDKKGMS+LMAEFDKINQK
Subjt:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK

A0A6J1BU34 probable ATP synthase 24 kDa subunit, mitochondrial

4.2e-84

100

Show/hide

Query:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ
        QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ
Subjt:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ

Query:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK
        DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK
Subjt:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK

A0A6J1GFA4 probable ATP synthase 24 kDa subunit, mitochondrial

2.0e-78

92.22

Show/hide

Query:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ
        QVLGS+SILHQGHAIPVRHFA+EAARPALKGD MLKNIFLEVK KFE A+DVFRKEKITIDPDDPAAVAQYAKVMK+AREKADLFSE++ IKYTIQTRTQ
Subjt:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ

Query:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK
        DIPDARTYLLTLKDIRIKRGL+DELGAEA+MFDALEKVEKELKKPLLRNDKKGMS+LMAEFDKINQK
Subjt:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK

A0A6J1IR90 probable ATP synthase 24 kDa subunit, mitochondrial

3.4e-81

95.21

Show/hide

Query:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ
        QVLGSQSILHQGHAIPVRHFAKEAARPALKGD+MLKNIFLEVKKKFETA+DVFRKEKITIDPDDPAAVAQYAKVMK+AREKADLFSE+QRIKYTIQTRTQ
Subjt:  QVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQ

Query:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK
        DIPDARTYLLTLKDIRIKR L+DELGAEA+MFDALEKVEKELKKPLLRNDKKGMS+LMAEFDKINQK
Subjt:  DIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK

SwissProt top hits

e value

%identity

Alignment

Q9SJ12 Probable ATP synthase 24 kDa subunit, mitochondrial

3.7e-61

68.21

Show/hide

Query:  FMCPLLQVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYT
        F+    Q+ G   IL Q HAIPVR FAKEAARP  KGDEMLK +F ++K KF+ A+D+ RKEKIT+DP+DPAAV QYA VMK  R+KAD+FSESQRIK+ 
Subjt:  FMCPLLQVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYT

Query:  IQTRTQDIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK
        I T TQDIPDAR YLL L++IR +RGLTDELGAEA+MF+ALEKVEK++KKPLLR+DKKGM +L+AEF+K N+K
Subjt:  IQTRTQDIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK

Arabidopsis top hits

e value

%identity

Alignment

AT2G21870.1 copper ion binding;cobalt ion binding;zinc ion binding

2.6e-62

68.21

Show/hide

Query:  FMCPLLQVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYT
        F+    Q+ G   IL Q HAIPVR FAKEAARP  KGDEMLK +F ++K KF+ A+D+ RKEKIT+DP+DPAAV QYA VMK  R+KAD+FSESQRIK+ 
Subjt:  FMCPLLQVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYT

Query:  IQTRTQDIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK
        I T TQDIPDAR YLL L++IR +RGLTDELGAEA+MF+ALEKVEK++KKPLLR+DKKGM +L+AEF+K N+K
Subjt:  IQTRTQDIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK

AT2G21870.2 copper ion binding;cobalt ion binding;zinc ion binding

2.6e-62

68.21

Show/hide

Query:  FMCPLLQVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYT
        F+    Q+ G   IL Q HAIPVR FAKEAARP  KGDEMLK +F ++K KF+ A+D+ RKEKIT+DP+DPAAV QYA VMK  R+KAD+FSESQRIK+ 
Subjt:  FMCPLLQVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYT

Query:  IQTRTQDIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK
        I T TQDIPDAR YLL L++IR +RGLTDELGAEA+MF+ALEKVEK++KKPLLR+DKKGM +L+AEF+K N+K
Subjt:  IQTRTQDIPDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK

Sequences

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CDS sequence

Show/hide CDS sequence

CAAACGAGGGCTCACTCCTCTTGGCTCTTATATCTGACTTCGAATCCTCAAACGACCCAACGAAGCATCACAAGAAAGGCGCAATCTGAGCTCCTGCCATGGCTTTATCT
TCCCGTCTATTGTCCAAATCCAAGCAGGTTAGCGGTTTTCCGTTCTGGATCGGCTCCGTTTACCCTATTTTTCAATTTCCCTGATTCTTCTTGTTGGAACGAACATTTTG
GATTAACATATATGAGTGTTGTGTTTATTATTCGGGAATGGAGCTTATTATATGGAAATATTCCTTCGGATCCTGCAAATGGCGTAATGATCATGAACAGCTGCTTAACG
TGGGTTTTTATGTGCCCCTTGTTACAGGTGCTTGGCAGTCAAAGTATCTTACACCAGGGGCATGCTATTCCTGTTCGTCACTTTGCAAAAGAGGCTGCTCGGCCTGCTCT
GAAGGGAGATGAAATGCTGAAGAACATATTTTTGGAAGTGAAAAAGAAATTCGAGACAGCACTTGATGTCTTCCGGAAAGAGAAGATCACAATTGATCCAGATGATCCTG
CTGCAGTAGCTCAATACGCCAAGGTCATGAAATTGGCAAGAGAGAAGGCAGATTTATTCTCAGAATCACAGAGAATCAAATACACCATTCAGACACGAACTCAAGACATC
CCTGATGCTAGAACATACTTGCTGACGTTGAAGGATATAAGGATTAAGAGAGGTCTTACTGATGAGCTTGGTGCAGAAGCTTTGATGTTTGATGCACTGGAAAAGGTTGA
GAAAGAATTGAAGAAACCTCTCTTGAGGAATGACAAGAAAGGAATGTCTGTTCTTATGGCTGAGTTTGACAAAATCAATCAGAAG

mRNA sequence

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Protein sequence

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QTRAHSSWLLYLTSNPQTTQRSITRKAQSELLPWLYLPVYCPNPSRLAVFRSGSAPFTLFFNFPDSSCWNEHFGLTYMSVVFIIREWSLLYGNIPSDPANGVMIMNSCLT
WVFMCPLLQVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQDI
PDARTYLLTLKDIRIKRGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQK

MS011344 (gene) of Bitter gourd (TR) v1 genome