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MS011396 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011396
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Genome locationscaffold239:1573076..1573827
RNA-Seq ExpressionMS011396
SyntenyMS011396
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132589.1 B3 domain-containing transcription factor VRN1-like isoform X1 [Momordica charantia]5.6e-5257.07Show/hide
Query:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT
        IPK FA+KYL EEFG I +  S+G++W LLYKW+R++   ++YIS GWK F EE+LLK GDVGFFQLIE  + LF+ +E    S S SPSL PKK+  T 
Subjt:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT

Query:  RNPFFQVDVRL---GRNSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
         NPFF+VD+         + IPM F K+H+ P  HT  L++G KKWKV MKNY R  RFSAGW +F RDNAL+D DTC FELLN
Subjt:  RNPFFQVDVRL---GRNSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
XP_022132590.1 B3 domain-containing transcription factor VRN1-like isoform X2 [Momordica charantia]5.6e-5257.07Show/hide
Query:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT
        IPK FA+KYL EEFG I +  S+G++W LLYKW+R++   ++YIS GWK F EE+LLK GDVGFFQLIE  + LF+ +E    S S SPSL PKK+  T 
Subjt:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT

Query:  RNPFFQVDVRL---GRNSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
         NPFF+VD+         + IPM F K+H+ P  HT  L++G KKWKV MKNY R  RFSAGW +F RDNAL+D DTC FELLN
Subjt:  RNPFFQVDVRL---GRNSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
XP_022132593.1 B3 domain-containing transcription factor VRN1-like [Momordica charantia]5.5e-10099.45Show/hide
Query:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT
        IPK FADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT
Subjt:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT

Query:  RNPFFQVDVRLGRNSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
        RNPFFQVDVRLGRNSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
Subjt:  RNPFFQVDVRLGRNSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
XP_022132700.1 B3 domain-containing transcription factor VRN1-like [Momordica charantia]1.6e-5159.68Show/hide
Query:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT
        IPK FA  YL E+ G I I T DG SWSLLYKWS ++   +AYIS GWK F EE+LLK+GDVGFFQ+IEKDQ LF+ +E    S SAS SL PKK  ATT
Subjt:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT

Query:  RNPFFQVDVRLGRNSMR-----IPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
        RNPFF+VDV     ++R     IPM F K+H+SP +H+ARLEVG+K+WKV MKNY++ IRF++GW  F  +N L+D D+C FELLN
Subjt:  RNPFFQVDVRLGRNSMR-----IPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
XP_022133305.1 B3 domain-containing protein Os12g0591400-like [Momordica charantia]3.6e-5159.24Show/hide
Query:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT
        IPK FA  YL EE G I I T DG SWSLLYKWS ++   +AYIS GWK F EE+LLK+GDVGFFQ+IEKDQ LF+ +E     TSAS S  PK   AT 
Subjt:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT

Query:  RNPFFQVDVRLGR---NSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
        RNPFF+VDV       +++ IPM F K+HLSP +H ARLEVG+K+W V +KNY++ +RF++GW  F R+N L+DEDTC FELLN
Subjt:  RNPFFQVDVRLGR---NSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
TrEMBL top hitse value%identityAlignment
A0A6J1BT74 B3 domain-containing transcription factor VRN1-like7.9e-5259.68Show/hide
Query:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT
        IPK FA  YL E+ G I I T DG SWSLLYKWS ++   +AYIS GWK F EE+LLK+GDVGFFQ+IEKDQ LF+ +E    S SAS SL PKK  ATT
Subjt:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT

Query:  RNPFFQVDVRLGRNSMR-----IPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
        RNPFF+VDV     ++R     IPM F K+H+SP +H+ARLEVG+K+WKV MKNY++ IRF++GW  F  +N L+D D+C FELLN
Subjt:  RNPFFQVDVRLGRNSMR-----IPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
A0A6J1BTG9 B3 domain-containing transcription factor VRN1-like isoform X12.7e-5257.07Show/hide
Query:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT
        IPK FA+KYL EEFG I +  S+G++W LLYKW+R++   ++YIS GWK F EE+LLK GDVGFFQLIE  + LF+ +E    S S SPSL PKK+  T 
Subjt:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT

Query:  RNPFFQVDVRL---GRNSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
         NPFF+VD+         + IPM F K+H+ P  HT  L++G KKWKV MKNY R  RFSAGW +F RDNAL+D DTC FELLN
Subjt:  RNPFFQVDVRL---GRNSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
A0A6J1BU95 B3 domain-containing transcription factor VRN1-like isoform X22.7e-5257.07Show/hide
Query:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT
        IPK FA+KYL EEFG I +  S+G++W LLYKW+R++   ++YIS GWK F EE+LLK GDVGFFQLIE  + LF+ +E    S S SPSL PKK+  T 
Subjt:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT

Query:  RNPFFQVDVRL---GRNSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
         NPFF+VD+         + IPM F K+H+ P  HT  L++G KKWKV MKNY R  RFSAGW +F RDNAL+D DTC FELLN
Subjt:  RNPFFQVDVRL---GRNSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
A0A6J1BUW1 B3 domain-containing protein Os12g0591400-like1.8e-5159.24Show/hide
Query:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT
        IPK FA  YL EE G I I T DG SWSLLYKWS ++   +AYIS GWK F EE+LLK+GDVGFFQ+IEKDQ LF+ +E     TSAS S  PK   AT 
Subjt:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT

Query:  RNPFFQVDVRLGR---NSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
        RNPFF+VDV       +++ IPM F K+HLSP +H ARLEVG+K+W V +KNY++ +RF++GW  F R+N L+DEDTC FELLN
Subjt:  RNPFFQVDVRLGR---NSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
A0A6J1BWP5 B3 domain-containing transcription factor VRN1-like2.7e-10099.45Show/hide
Query:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT
        IPK FADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT
Subjt:  IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATT

Query:  RNPFFQVDVRLGRNSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
        RNPFFQVDVRLGRNSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
Subjt:  RNPFFQVDVRLGRNSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN
SwissProt top hitse value%identityAlignment
Q10Q26 B3 domain-containing protein Os03g02123002.0e-0437.68Show/hide
Query:  MRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKN--YQRGIR--FSAGWPAFCRDNALEDEDTCFFELL
        + +PMEF + H         L +  + W V +K+   +RG R  F  GW  FC DN L   DTCFF +L
Subjt:  MRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKN--YQRGIR--FSAGWPAFCRDNALEDEDTCFFELL
Q9FK61 B3 domain-containing protein At5g180903.1e-0538.67Show/hide
Query:  IPKVFADKYLVEEFGTIGIHTSDG-RSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLL
        IPK+F + ++  E     IH  +G RSW ++YK+S  Q R  A    GW R  +E  L+ GDV  F LI+  ++L
Subjt:  IPKVFADKYLVEEFGTIGIHTSDG-RSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLL
Arabidopsis top hitse value%identityAlignment
AT5G18090.1 AP2/B3-like transcriptional factor family protein2.2e-0638.67Show/hide
Query:  IPKVFADKYLVEEFGTIGIHTSDG-RSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLL
        IPK+F + ++  E     IH  +G RSW ++YK+S  Q R  A    GW R  +E  L+ GDV  F LI+  ++L
Subjt:  IPKVFADKYLVEEFGTIGIHTSDG-RSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTCCTAAAGTATTTGCAGACAAGTATTTAGTGGAGGAGTTTGGAACCATTGGAATTCATACTTCAGATGGTAGAAGTTGGTCTCTTTTGTACAAATGGAGTCGAACCCA
GGTGCGAGATTATGCTTACATTTCAGATGGGTGGAAGCGTTTTGTAGAAGAAAGTCTGTTGAAAGAAGGTGATGTTGGGTTCTTTCAACTCATCGAAAAAGATCAACTTT
TATTCTCAAAACAAGAGAAGAGCATCTGTAGTACCTCTGCTTCTCCTTCCCTTTTGCCGAAGAAGAAAGTTGCAACTACCAGAAATCCCTTCTTCCAAGTTGATGTTCGA
TTGGGTAGAAATTCGATGAGAATTCCTATGGAGTTTATGAAGGAACATCTTTCACCAGAAATGCATACTGCGAGGCTTGAGGTTGGGGAAAAAAAATGGAAGGTGATCAT
GAAGAATTACCAGAGGGGTATCAGATTCTCAGCTGGGTGGCCTGCATTTTGCAGGGACAATGCCTTGGAAGATGAAGATACATGCTTTTTTGAGCTGCTGAAC
mRNA sequenceShow/hide mRNA sequence
ATTCCTAAAGTATTTGCAGACAAGTATTTAGTGGAGGAGTTTGGAACCATTGGAATTCATACTTCAGATGGTAGAAGTTGGTCTCTTTTGTACAAATGGAGTCGAACCCA
GGTGCGAGATTATGCTTACATTTCAGATGGGTGGAAGCGTTTTGTAGAAGAAAGTCTGTTGAAAGAAGGTGATGTTGGGTTCTTTCAACTCATCGAAAAAGATCAACTTT
TATTCTCAAAACAAGAGAAGAGCATCTGTAGTACCTCTGCTTCTCCTTCCCTTTTGCCGAAGAAGAAAGTTGCAACTACCAGAAATCCCTTCTTCCAAGTTGATGTTCGA
TTGGGTAGAAATTCGATGAGAATTCCTATGGAGTTTATGAAGGAACATCTTTCACCAGAAATGCATACTGCGAGGCTTGAGGTTGGGGAAAAAAAATGGAAGGTGATCAT
GAAGAATTACCAGAGGGGTATCAGATTCTCAGCTGGGTGGCCTGCATTTTGCAGGGACAATGCCTTGGAAGATGAAGATACATGCTTTTTTGAGCTGCTGAAC
Protein sequenceShow/hide protein sequence
IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATTRNPFFQVDVR
LGRNSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN