CuGenDBv2

Gene ID	MS011397
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	B3 domain-containing transcription factor VRN1-like
Genome location	scaffold239:1575078..1575329
RNA-Seq Expression	MS011397
Synteny	MS011397
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR003340 - B3 DNA binding domain IPR015300 - DNA-binding pseudobarrel domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022132593.1 B3 domain-containing transcription factor VRN1-like [Momordica charantia]

2.4e-42

100

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Query:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY
        IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY
Subjt:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY

XP_022132700.1 B3 domain-containing transcription factor VRN1-like [Momordica charantia]

8.2e-30

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Query:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY
        IPKKFV DYGKFLS+S+ L+L DGMEWK+GL TA NG+VWL+NGWH FAEHY LE GS+LV R DG STFHT IFD TGSEI+Y
Subjt:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY

XP_023003055.1 B3 domain-containing transcription factor VRN1-like isoform X1 [Cucurbita maxima]

2.8e-30

77.38

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Query:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY
        IPKKFV DYG+ LSTSVRL+L DGMEWK+GLTTA NG VWLQNGWH FAEHYSLEFGSLLVF+ DG STF T+IFD +G E +Y
Subjt:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY

XP_023003056.1 B3 domain-containing transcription factor VRN1-like isoform X2 [Cucurbita maxima]

2.8e-30

77.38

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Query:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY
        IPKKFV DYG+ LSTSVRL+L DGMEWK+GLTTA NG VWLQNGWH FAEHYSLEFGSLLVF+ DG STF T+IFD +G E +Y
Subjt:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY

XP_023003057.1 B3 domain-containing transcription factor VRN1-like isoform X3 [Cucurbita maxima]

2.8e-30

77.38

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Query:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY
        IPKKFV DYG+ LSTSVRL+L DGMEWK+GLTTA NG VWLQNGWH FAEHYSLEFGSLLVF+ DG STF T+IFD +G E +Y
Subjt:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY

TrEMBL top hits

e value

%identity

Alignment

A0A6J1BT74 B3 domain-containing transcription factor VRN1-like

4.0e-30

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Query:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY
        IPKKFV DYGKFLS+S+ L+L DGMEWK+GL TA NG+VWL+NGWH FAEHY LE GS+LV R DG STFHT IFD TGSEI+Y
Subjt:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY

A0A6J1BWP5 B3 domain-containing transcription factor VRN1-like

1.2e-42

100

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Query:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY
        IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY
Subjt:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY

A0A6J1KLC7 B3 domain-containing transcription factor VRN1-like isoform X3

1.4e-30

77.38

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Query:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY
        IPKKFV DYG+ LSTSVRL+L DGMEWK+GLTTA NG VWLQNGWH FAEHYSLEFGSLLVF+ DG STF T+IFD +G E +Y
Subjt:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY

A0A6J1KN14 B3 domain-containing transcription factor VRN1-like isoform X2

1.4e-30

77.38

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Query:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY
        IPKKFV DYG+ LSTSVRL+L DGMEWK+GLTTA NG VWLQNGWH FAEHYSLEFGSLLVF+ DG STF T+IFD +G E +Y
Subjt:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY

A0A6J1KQQ1 B3 domain-containing transcription factor VRN1-like isoform X1

1.4e-30

77.38

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Query:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY
        IPKKFV DYG+ LSTSVRL+L DGMEWK+GLTTA NG VWLQNGWH FAEHYSLEFGSLLVF+ DG STF T+IFD +G E +Y
Subjt:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY

SwissProt top hits

e value

%identity

Alignment

Q10GM4 B3 domain-containing protein Os03g0622100

5.4e-08

30.86

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Query:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSE
        +P +F  ++   +S  V L+   G  W IG+  +  G + L++GW  F +   ++    L+FR+ G S+F   IFD +G E
Subjt:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSE

Q7XS75 Putative B3 domain-containing protein Os04g0346900

1.2e-04

30.95

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Query:  IPKKFVTDY--GKFLSTSVRLRLLD-GMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSE
        IP KFV DY  G+ L++++ + L   G  W++ L    +G V+L  GW  F   + +  G +++FR++G   F  ++F   G +
Subjt:  IPKKFVTDY--GKFLSTSVRLRLLD-GMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSE

Q8L3W1 B3 domain-containing transcription factor VRN1

1.3e-14

42.86

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Query:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY
        +P KFV+ +   LS +V L + DG  W++GL  A N  +W Q+GW  F + YS+  G LL+FR++G S F   IF+++ SEI Y
Subjt:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY

Arabidopsis top hits

e value

%identity

Alignment

AT3G18990.1 AP2/B3-like transcriptional factor family protein

9.3e-16

42.86

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Query:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY
        +P KFV+ +   LS +V L + DG  W++GL  A N  +W Q+GW  F + YS+  G LL+FR++G S F   IF+++ SEI Y
Subjt:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY

AT5G32460.1 Transcriptional factor B3 family protein

9.7e-05

34.09

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Query:  IPKKFVTDY--GKFLSTSVRLRLLDGME--WKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY
        IPK F ++Y  G+    +  LR  D  E  WKI +         +  GW  FA  ++L+   +LVFR +G   FH T F ++  EI Y
Subjt:  IPKKFVTDY--GKFLSTSVRLRLLDGME--WKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY

AT5G60140.1 AP2/B3-like transcriptional factor family protein

4.8e-04

30.77

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Query:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGA--VWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFD
        +P  F +   K L  +V +R + G  WK+G            + +GW       +L  G LL F FDG   F+ +IFD
Subjt:  IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGA--VWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFD

Sequences

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CDS sequence

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ATTCCGAAGAAGTTCGTCACAGATTATGGGAAGTTTCTATCGACTTCCGTACGTCTCAGACTTCTCGATGGCATGGAATGGAAAATCGGATTAACGACCGCAGCAAATGG
CGCCGTTTGGCTTCAGAACGGCTGGCACCCATTTGCAGAGCATTACAGTTTGGAATTTGGTTCACTGTTGGTTTTTAGATTCGACGGATGCTCAACTTTCCACACAACCA
TATTTGATATTACTGGGTCCGAGATTAAATAT

mRNA sequence

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Protein sequence

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IPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKY

MS011397 (gene) of Bitter gourd (TR) v1 genome