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MS011406 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011406
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold239:1646870..1647163
RNA-Seq ExpressionMS011406
SyntenyMS011406
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3458330.1 reverse transcriptase [Gossypium australe]5.6e-1442.86Show/hide
Query:  VETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVAL--NKQPSSKGSSSSGELERWWKGMWQMRIPSKIKV
        V  LI+     WKEDVI+     D+AN ILSI + R   ED+L+W ++ TG+YTVKSGY+V +    Q  S     +G+ + ++K +W++++PSKIKV
Subjt:  VETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVAL--NKQPSSKGSSSSGELERWWKGMWQMRIPSKIKV

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]7.8e-2458Show/hide
Query:  KVETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVALNKQP--SSKGSSSSGELERWWKGMWQMRIPSKIKVF
        +V +L++ E   W+ DV+   FTPDEA  ILSI IGRG+EED LIW++EKTGVY+V+SGYKVAL   P   +  SSSS E+  WW G W+M IP+KIKVF
Subjt:  KVETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVALNKQP--SSKGSSSSGELERWWKGMWQMRIPSKIKVF

XP_022159001.1 uncharacterized protein LOC111025446 [Momordica charantia]8.4e-1858.14Show/hide
Query:  VETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVALNKQPSSKGSSSSGE-LERWWKGM
        V +LIN +LA WK D I  AF+PDEA  ILSI +G  +  D LIWH+EK GVYTVKSGY++A+ KQP    SSSS E +  WWKG+
Subjt:  VETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVALNKQPSSKGSSSSGE-LERWWKGM

XP_030958760.1 uncharacterized protein LOC115980671 [Quercus lobata]1.9e-1447.47Show/hide
Query:  VETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVALNKQP-SSKGSSSSGE-LERWWKGMWQMRIPSKIKVF
        V  LI+ +L +W+ D++   F P EA++IL+I I     ED LIW   + GV++VKS Y VALN    S++G SS G+ LER WK +W + IPSKIK+F
Subjt:  VETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVALNKQP-SSKGSSSSGE-LERWWKGMWQMRIPSKIKVF

XP_030970961.1 uncharacterized protein LOC115991405 [Quercus lobata]1.9e-1447.47Show/hide
Query:  VETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVALNKQP-SSKGSSSSGE-LERWWKGMWQMRIPSKIKVF
        V  LI+ +L +W+ D++   F P EA++IL+I I     ED LIW   + GV++VKS Y VALN    S++G SS G+ LER WK +W + IPSKIK+F
Subjt:  VETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVALNKQP-SSKGSSSSGE-LERWWKGMWQMRIPSKIKVF

TrEMBL top hitse value%identityAlignment
A0A5B6UJK2 Reverse transcriptase2.7e-1442.86Show/hide
Query:  VETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVAL--NKQPSSKGSSSSGELERWWKGMWQMRIPSKIKV
        V  LI+     WKEDVI+     D+AN ILSI + R   ED+L+W ++ TG+YTVKSGY+V +    Q  S     +G+ + ++K +W++++PSKIKV
Subjt:  VETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVAL--NKQPSSKGSSSSGELERWWKGMWQMRIPSKIKV

A0A5B6V614 Reverse transcriptase7.9e-1442.27Show/hide
Query:  VETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVAL--NKQPSSKGSSSSGELERWWKGMWQMRIPSKIK
        V  LI+     WKEDVI+     D+AN ILSI + R   ED+L+W ++ TG+YTVKSGY+V +    Q  S     +G+ + ++K +W++++PSKIK
Subjt:  VETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVAL--NKQPSSKGSSSSGELERWWKGMWQMRIPSKIK

A0A5B6VYT4 Reverse transcriptase1.0e-1340.82Show/hide
Query:  VETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVALNKQP--SSKGSSSSGELERWWKGMWQMRIPSKIKV
        V  LI++    WK+DVI      D+A  ILSI + R   ED+L+W ++ TG+YTVKSGY+V +  +P  +S      G+ + ++K +W+++IPSKIK+
Subjt:  VETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVALNKQP--SSKGSSSSGELERWWKGMWQMRIPSKIKV

A0A6J1DAR4 uncharacterized protein LOC1110189543.8e-2458Show/hide
Query:  KVETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVALNKQP--SSKGSSSSGELERWWKGMWQMRIPSKIKVF
        +V +L++ E   W+ DV+   FTPDEA  ILSI IGRG+EED LIW++EKTGVY+V+SGYKVAL   P   +  SSSS E+  WW G W+M IP+KIKVF
Subjt:  KVETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVALNKQP--SSKGSSSSGELERWWKGMWQMRIPSKIKVF

A0A6J1E2L3 uncharacterized protein LOC1110254464.0e-1858.14Show/hide
Query:  VETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVALNKQPSSKGSSSSGE-LERWWKGM
        V +LIN +LA WK D I  AF+PDEA  ILSI +G  +  D LIWH+EK GVYTVKSGY++A+ KQP    SSSS E +  WWKG+
Subjt:  VETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVALNKQPSSKGSSSSGE-LERWWKGM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22440.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT4G29090.1)8.7e-0540.32Show/hide
Query:  VETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVA
        V  LI++    WK D +     P +   IL I   R    D   W H K+G YTVKSGY VA
Subjt:  VETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGGTTGAGACTCTAATTAACAAAGAACTAGCTCAATGGAAGGAAGATGTGATTATTGGTGCTTTTACACCAGATGAAGCTAATAGTATTTTATCCATCCTTATTGGTCG
TGGATCTGAGGAGGACATGCTAATTTGGCACCATGAGAAAACAGGAGTTTATACTGTAAAAAGCGGTTACAAGGTTGCTCTGAATAAGCAACCCAGTTCCAAAGGTTCGT
CTTCTTCAGGGGAGTTGGAAAGGTGGTGGAAAGGCATGTGGCAAATGAGGATCCCCTCTAAAATCAAGGTTTTC
mRNA sequenceShow/hide mRNA sequence
AAGGTTGAGACTCTAATTAACAAAGAACTAGCTCAATGGAAGGAAGATGTGATTATTGGTGCTTTTACACCAGATGAAGCTAATAGTATTTTATCCATCCTTATTGGTCG
TGGATCTGAGGAGGACATGCTAATTTGGCACCATGAGAAAACAGGAGTTTATACTGTAAAAAGCGGTTACAAGGTTGCTCTGAATAAGCAACCCAGTTCCAAAGGTTCGT
CTTCTTCAGGGGAGTTGGAAAGGTGGTGGAAAGGCATGTGGCAAATGAGGATCCCCTCTAAAATCAAGGTTTTC
Protein sequenceShow/hide protein sequence
KVETLINKELAQWKEDVIIGAFTPDEANSILSILIGRGSEEDMLIWHHEKTGVYTVKSGYKVALNKQPSSKGSSSSGELERWWKGMWQMRIPSKIKVF