CuGenDBv2

Gene ID	MS011516
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribulose bisphosphate carboxylase large chain
Genome location	scaffold239:2537000..2537265
RNA-Seq Expression	MS011516
Synteny	MS011516
Gene Ontology terms	GO:0009853 - photorespiration (biological process) GO:0019253 - reductive pentose-phosphate cycle (biological process) GO:0009507 - chloroplast (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0004497 - monooxygenase activity (molecular function) GO:0016984 - ribulose-bisphosphate carboxylase activity (molecular function)
InterPro domains	IPR000685 - Ribulose bisphosphate carboxylase, large subunit, C-terminal IPR033966 - RuBisCO IPR036376 - Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AAY90070.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Dendrosicyos socotranus]

3.2e-37

80.81

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Query:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE
        +EGERDITLGFVDLLRD+++EKDRSRGIYFTQ WV           GIHVW+MPALTEIFGDDFVLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Subjt:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE

ABG24929.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Momordica charantia]

3.2e-37

82.83

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Query:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE
        +EGERDITLGFVDLLRDEYVEKDRSRGIYFTQ WV           GIHVW+MPALTEIFGDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Subjt:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE

ALX36892.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Momordica charantia]

3.2e-37

82.83

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Query:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE
        +EGERDITLGFVDLLRDEYVEKDRSRGIYFTQ WV           GIHVW+MPALTEIFGDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Subjt:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE

AMD82865.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Rumex flexuosus]

7.1e-37

81.82

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Query:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE
        +EGERDITLGFVDLLRD+YVEKDRSRGIYFTQ WV           GIHVW+MPALTEIFGDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Subjt:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE

YP_009456069.1 ribulose-1 [Momordica charantia]

3.2e-37

82.83

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Query:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE
        +EGERDITLGFVDLLRDEYVEKDRSRGIYFTQ WV           GIHVW+MPALTEIFGDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Subjt:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE

TrEMBL top hits

e value

%identity

Alignment

A0A0U3MZI0 Ribulose bisphosphate carboxylase large chain (Fragment)

1.6e-37

82.83

Show/hide

Query:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE
        +EGERDITLGFVDLLRDEYVEKDRSRGIYFTQ WV           GIHVW+MPALTEIFGDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Subjt:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE

A0A291PUL7 Ribulose bisphosphate carboxylase large chain

3.5e-37

81.82

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Query:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE
        +EGERDITLGFVDLLRD+YVEKDRSRGIYFTQ WV           GIHVW+MPALTEIFGDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Subjt:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE

A0A2I6C015 Ribulose bisphosphate carboxylase large chain

1.6e-37

82.83

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Query:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE
        +EGERDITLGFVDLLRDEYVEKDRSRGIYFTQ WV           GIHVW+MPALTEIFGDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Subjt:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE

A5X4E1 Ribulose bisphosphate carboxylase large chain (Fragment)

1.6e-37

82.83

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Query:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE
        +EGERDITLGFVDLLRDEYVEKDRSRGIYFTQ WV           GIHVW+MPALTEIFGDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Subjt:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE

Q2HJK4 Ribulose bisphosphate carboxylase large chain (Fragment)

1.6e-37

80.81

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Query:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE
        +EGERDITLGFVDLLRD+++EKDRSRGIYFTQ WV           GIHVW+MPALTEIFGDDFVLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Subjt:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE

SwissProt top hits

e value

%identity

Alignment

P28409 Ribulose bisphosphate carboxylase large chain (Fragment)

1.2e-39

80.81

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Query:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE
        +EGERDITLGFVDLLRD+Y+EKDRSRGIYFTQ WV           GIHVW+MPALTEIFGDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Subjt:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE

P28434 Ribulose bisphosphate carboxylase large chain (Fragment)

9.4e-40

81.82

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Query:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE
        +EGERDITLGFVDLLRD+YVEKDRSRGIYFTQ WV           GIHVW+MPALTEIFGDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Subjt:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE

P43225 Ribulose bisphosphate carboxylase large chain (Fragment)

2.1e-39

78.79

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Query:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE
        +EGERD+TLGFVDLLRD+Y+EKDRSRG+YFTQ WV           GIHVW+MPALTEIFGDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Subjt:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE

Q05986 Ribulose bisphosphate carboxylase large chain (Fragment)

1.2e-39

80.81

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Query:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE
        +EGERDITLGFVDLLRD+Y+EKDRSRGIYFTQ WV           GIHVW+MPALTEIFGDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Subjt:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE

Q05994 Ribulose bisphosphate carboxylase large chain (Fragment)

1.2e-39

80.81

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Query:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE
        +EGERDITLGFVDLLRD+Y+EKDRSRGIYFTQ WV           GIHVW+MPALTEIFGDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Subjt:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE

Arabidopsis top hits

e value

%identity

Alignment

ATCG00490.1 ribulose-bisphosphate carboxylases

6.2e-39

77.78

Show/hide

Query:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE
        +EG+R+ TLGFVDLLRD+YVEKDRSRGI+FTQ WV           GIHVW+MPALTEIFGDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Subjt:  IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE

Sequences

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CDS sequence

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ATTGAAGGGGAAAGAGACATCACTTTAGGCTTTGTTGATTTACTTCGTGATGAGTATGTTGAAAAAGATCGAAGCCGCGGTATTTATTTCACTCAATGGGTTGGTATTCA
CGTTTGGTATATGCCTGCTCTGACCGAGATTTTTGGAGATGATTTTGTACTACAATTCGGCGGAGGAACTTTAGAGCACCCTTGGGGTAATGCACCTAGTGCCGTAGCTA
ATCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAA

mRNA sequence

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Protein sequence

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IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQWVGIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE

MS011516 (gene) of Bitter gourd (TR) v1 genome