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MS011538 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011538
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase III domain-containing protein
Genome locationscaffold239:2719786..2719920
RNA-Seq ExpressionMS011538
SyntenyMS011538
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0004525 - ribonuclease III activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581854.1 hypothetical protein SDJN03_21856, partial [Cucurbita argyrosperma subsp. sororia]1.6e-0871.11Show/hide
Query:  SKLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV
        SK VE + LYLG+EQWL N  KVQKPRS+ NAASLAY+G+CIYE+
Subjt:  SKLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV

KAG7018286.1 hypothetical protein SDJN02_20154 [Cucurbita argyrosperma subsp. argyrosperma]9.5e-0971.11Show/hide
Query:  SKLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV
        SK VE + LYLG+EQWL N  KVQKPRS+ NAASLAY+G+CIYE+
Subjt:  SKLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV

XP_023526365.1 uncharacterized protein LOC111789879 [Cucurbita pepo subsp. pepo]1.6e-0871.11Show/hide
Query:  SKLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV
        SK VE + LYLG+EQWL N  KVQKPRS+ NAASLAY+G+CIYE+
Subjt:  SKLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV

XP_038881983.1 uncharacterized protein LOC120073279 isoform X1 [Benincasa hispida]1.2e-0871.11Show/hide
Query:  SKLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV
        SKLVE + LYLG++QWL +  KVQKPRS+ NAASLAYIG+CIYE+
Subjt:  SKLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV

XP_038882062.1 uncharacterized protein LOC120073279 isoform X2 [Benincasa hispida]1.2e-0871.11Show/hide
Query:  SKLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV
        SKLVE + LYLG++QWL +  KVQKPRS+ NAASLAYIG+CIYE+
Subjt:  SKLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV

TrEMBL top hitse value%identityAlignment
A0A5D3BY20 Mini-ribonuclease 3 isoform X28.7e-0868.18Show/hide
Query:  KLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV
        KL E + LYLG++QWL +  KVQKPRS+ NAASLAYIG+CIYE+
Subjt:  KLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV

A0A6J1D1Y6 uncharacterized protein LOC111016851 isoform X22.3e-0875Show/hide
Query:  KLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV
        K VE E LYLG EQWL N  KVQKPRS+ NAASLAYIG+CIYE+
Subjt:  KLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV

A0A6J1D2Y6 uncharacterized protein LOC111016851 isoform X12.3e-0875Show/hide
Query:  KLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV
        K VE E LYLG EQWL N  KVQKPRS+ NAASLAYIG+CIYE+
Subjt:  KLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV

A0A6J1GYR2 uncharacterized protein LOC1114580657.8e-0971.11Show/hide
Query:  SKLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV
        SK VE + LYLG+EQWL N  KVQKPRS+ NAASLAY+G+CIYE+
Subjt:  SKLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV

A0A6J1J002 uncharacterized protein LOC1114799937.8e-0971.11Show/hide
Query:  SKLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV
        SK VE + LYLG+EQWL N  KVQKPRS+ NAASLAY+G+CIYE+
Subjt:  SKLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55140.1 Ribonuclease III family protein1.6e-0660Show/hide
Query:  LGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV
        +G+E+W  +  KV+KPRS+ NAASLAYIG+ IYE+
Subjt:  LGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV

AT1G55140.2 Ribonuclease III family protein1.6e-0660Show/hide
Query:  LGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV
        +G+E+W  +  KV+KPRS+ NAASLAYIG+ IYE+
Subjt:  LGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV

AT3G13740.1 Ribonuclease III family protein6.1e-0647.62Show/hide
Query:  VESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV
        V+ +  Y+G+E W  +  K++KPRS+ N ASLA+IG+ IYE+
Subjt:  VESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV

AT3G13740.2 Ribonuclease III family protein6.1e-0647.62Show/hide
Query:  VESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV
        V+ +  Y+G+E W  +  K++KPRS+ N ASLA+IG+ IYE+
Subjt:  VESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGCAAACTAGTGGAGTCGGAGAGTCTTTATTTGGGACATGAGCAGTGGTTGTCAAATCTACTTAAGGTGCAGAAACCTCGATCCATGTCCAATGCAGCATCATTAGCATA
TATTGGTAATTGCATCTACGAGGTA
mRNA sequenceShow/hide mRNA sequence
AGCAAACTAGTGGAGTCGGAGAGTCTTTATTTGGGACATGAGCAGTGGTTGTCAAATCTACTTAAGGTGCAGAAACCTCGATCCATGTCCAATGCAGCATCATTAGCATA
TATTGGTAATTGCATCTACGAGGTA
Protein sequenceShow/hide protein sequence
SKLVESESLYLGHEQWLSNLLKVQKPRSMSNAASLAYIGNCIYEV