; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS011553 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011553
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCOMPASS-like H3K4 histone methylase component WDR5A
Genome locationscaffold239:2824273..2824638
RNA-Seq ExpressionMS011553
SyntenyMS011553
Gene Ontology termsGO:0051568 - histone H3-K4 methylation (biological process)
GO:0048188 - Set1C/COMPASS complex (cellular component)
GO:0008168 - methyltransferase activity (molecular function)
GO:0042393 - histone binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR019775 - WD40 repeat, conserved site
IPR020472 - G-protein beta WD-40 repeat
IPR036322 - WD40-repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143426.1 COMPASS-like H3K4 histone methylase component WDR5A [Cucumis sativus]1.6e-6396.72Show/hide
Query:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD
        P+QEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVS+GSL+KTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVK+GKCLKVLPAHSDPVTGVD
Subjt:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD

Query:  FNRDGSLIVSSSYDGLCRIWDA
        FNRDGSLIVSSSYDGLCRIWDA
Subjt:  FNRDGSLIVSSSYDGLCRIWDA

XP_008440490.1 PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Cucumis melo]1.6e-6396.72Show/hide
Query:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD
        P+QEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVS+GSL+KTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVK+GKCLKVLPAHSDPVTGVD
Subjt:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD

Query:  FNRDGSLIVSSSYDGLCRIWDA
        FNRDGSLIVSSSYDGLCRIWDA
Subjt:  FNRDGSLIVSSSYDGLCRIWDA

XP_022133170.1 COMPASS-like H3K4 histone methylase component WDR5A [Momordica charantia]8.7e-65100Show/hide
Query:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD
        PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD
Subjt:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD

Query:  FNRDGSLIVSSSYDGLCRIWDA
        FNRDGSLIVSSSYDGLCRIWDA
Subjt:  FNRDGSLIVSSSYDGLCRIWDA

XP_022950714.1 COMPASS-like H3K4 histone methylase component WDR5A [Cucurbita moschata]2.1e-6397.54Show/hide
Query:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD
        PL EFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVS+GSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVK+GKCLKVLPAHSDPVTGVD
Subjt:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD

Query:  FNRDGSLIVSSSYDGLCRIWDA
        FNRDGSLIVSSSYDGLCRIWDA
Subjt:  FNRDGSLIVSSSYDGLCRIWDA

XP_038883363.1 COMPASS-like H3K4 histone methylase component WDR5A [Benincasa hispida]1.6e-6396.72Show/hide
Query:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD
        P+QEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVS+GSL+KTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVK+GKCLKVLPAHSDPVTGVD
Subjt:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD

Query:  FNRDGSLIVSSSYDGLCRIWDA
        FNRDGSLIVSSSYDGLCRIWDA
Subjt:  FNRDGSLIVSSSYDGLCRIWDA

TrEMBL top hitse value%identityAlignment
A0A0A0KGK9 WD_REPEATS_REGION domain-containing protein7.9e-6496.72Show/hide
Query:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD
        P+QEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVS+GSL+KTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVK+GKCLKVLPAHSDPVTGVD
Subjt:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD

Query:  FNRDGSLIVSSSYDGLCRIWDA
        FNRDGSLIVSSSYDGLCRIWDA
Subjt:  FNRDGSLIVSSSYDGLCRIWDA

A0A1S3B1Z0 COMPASS-like H3K4 histone methylase component WDR5A7.9e-6496.72Show/hide
Query:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD
        P+QEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVS+GSL+KTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVK+GKCLKVLPAHSDPVTGVD
Subjt:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD

Query:  FNRDGSLIVSSSYDGLCRIWDA
        FNRDGSLIVSSSYDGLCRIWDA
Subjt:  FNRDGSLIVSSSYDGLCRIWDA

A0A5A7SYL9 COMPASS-like H3K4 histone methylase component WDR5A7.9e-6496.72Show/hide
Query:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD
        P+QEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVS+GSL+KTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVK+GKCLKVLPAHSDPVTGVD
Subjt:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD

Query:  FNRDGSLIVSSSYDGLCRIWDA
        FNRDGSLIVSSSYDGLCRIWDA
Subjt:  FNRDGSLIVSSSYDGLCRIWDA

A0A6J1BUJ4 COMPASS-like H3K4 histone methylase component WDR5A4.2e-65100Show/hide
Query:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD
        PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD
Subjt:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD

Query:  FNRDGSLIVSSSYDGLCRIWDA
        FNRDGSLIVSSSYDGLCRIWDA
Subjt:  FNRDGSLIVSSSYDGLCRIWDA

A0A6J1ILQ0 COMPASS-like H3K4 histone methylase component WDR5A1.0e-6397.54Show/hide
Query:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD
        PL EFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVS+GSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVK+GKCLKVLPAHSDPVTGVD
Subjt:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD

Query:  FNRDGSLIVSSSYDGLCRIWDA
        FNRDGSLIVSSSYDGLCRIWDA
Subjt:  FNRDGSLIVSSSYDGLCRIWDA

SwissProt top hitse value%identityAlignment
P61964 WD repeat-containing protein 56.1e-5381.74Show/hide
Query:  GHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGS
        GH+ G+SD+A+SSDS  LVSASDDKTL++WDVSSG  +KTL GH+NYVFC NFNPQSN+IVSGSFDE+VRIWDVKTGKCLK LPAHSDPV+ V FNRDGS
Subjt:  GHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGS

Query:  LIVSSSYDGLCRIWD
        LIVSSSYDGLCRIWD
Subjt:  LIVSSSYDGLCRIWD

P61965 WD repeat-containing protein 56.1e-5381.74Show/hide
Query:  GHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGS
        GH+ G+SD+A+SSDS  LVSASDDKTL++WDVSSG  +KTL GH+NYVFC NFNPQSN+IVSGSFDE+VRIWDVKTGKCLK LPAHSDPV+ V FNRDGS
Subjt:  GHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGS

Query:  LIVSSSYDGLCRIWD
        LIVSSSYDGLCRIWD
Subjt:  LIVSSSYDGLCRIWD

Q2KIG2 WD repeat-containing protein 56.1e-5381.74Show/hide
Query:  GHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGS
        GH+ G+SD+A+SSDS  LVSASDDKTL++WDVSSG  +KTL GH+NYVFC NFNPQSN+IVSGSFDE+VRIWDVKTGKCLK LPAHSDPV+ V FNRDGS
Subjt:  GHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGS

Query:  LIVSSSYDGLCRIWD
        LIVSSSYDGLCRIWD
Subjt:  LIVSSSYDGLCRIWD

Q498M4 WD repeat-containing protein 56.1e-5381.74Show/hide
Query:  GHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGS
        GH+ G+SD+A+SSDS  LVSASDDKTL++WDVSSG  +KTL GH+NYVFC NFNPQSN+IVSGSFDE+VRIWDVKTGKCLK LPAHSDPV+ V FNRDGS
Subjt:  GHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGS

Query:  LIVSSSYDGLCRIWD
        LIVSSSYDGLCRIWD
Subjt:  LIVSSSYDGLCRIWD

Q9M2Z2 COMPASS-like H3K4 histone methylase component WDR5A1.3e-6087.7Show/hide
Query:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD
        P+QEF GHE G+SD+AFSSD+RF+VSASDDKTL+LWDV +GSLIKTL GHTNY FCVNFNPQSNMIVSGSFDETVRIWDV TGKCLKVLPAHSDPVT VD
Subjt:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD

Query:  FNRDGSLIVSSSYDGLCRIWDA
        FNRDGSLIVSSSYDGLCRIWD+
Subjt:  FNRDGSLIVSSSYDGLCRIWDA

Arabidopsis top hitse value%identityAlignment
AT2G41500.1 WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related3.1e-2035Show/hide
Query:  LQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDF
        LQ F+GH   ++ +AF    ++L + S DKT RLWD+++G+ +    GH+  V+ + F     +  S   D   R+WD++TG+ + V   H  PV  V+F
Subjt:  LQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDF

Query:  NRDGSLIVSSSYDGLCRIWD
        + +G  + S   D  CRIWD
Subjt:  NRDGSLIVSSSYDGLCRIWD

AT3G49660.1 Transducin/WD40 repeat-like superfamily protein9.6e-6287.7Show/hide
Query:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD
        P+QEF GHE G+SD+AFSSD+RF+VSASDDKTL+LWDV +GSLIKTL GHTNY FCVNFNPQSNMIVSGSFDETVRIWDV TGKCLKVLPAHSDPVT VD
Subjt:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD

Query:  FNRDGSLIVSSSYDGLCRIWDA
        FNRDGSLIVSSSYDGLCRIWD+
Subjt:  FNRDGSLIVSSSYDGLCRIWDA

AT4G02730.1 Transducin/WD40 repeat-like superfamily protein2.1e-4564.75Show/hide
Query:  LQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSG-SLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD
        +  ++GH  G+SDLA+SSDS +  SASDD TLR+WD  S    +K L GHTN+VFCVNFNP SN+IVSGSFDET+RIW+VKTGKC++++ AHS P++ V 
Subjt:  LQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSG-SLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD

Query:  FNRDGSLIVSSSYDGLCRIWDA
        FNRDGSLIVS+S+DG C+IWDA
Subjt:  FNRDGSLIVSSSYDGLCRIWDA

AT5G25150.1 TBP-associated factor 53.1e-2035.04Show/hide
Query:  FQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRD
        ++GH   V D  FS    +  S S D+T R+W +     ++ + GH + V CV ++P  N I +GS D+TVR+WDV+TG+C+++   H   V  +  + D
Subjt:  FQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRD

Query:  GSLIVSSSYDGLCRIWD
        G  + S   DG   +WD
Subjt:  GSLIVSSSYDGLCRIWD

AT5G52820.1 WD-40 repeat family protein / notchless protein, putative2.0e-2236.67Show/hide
Query:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD
        P +   GH+Q V+ + FS D +++ SAS DK++RLW+  +G  +    GH   V+ V+++  S +++SGS D T++IW+++T K  + LP H+D V  VD
Subjt:  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVD

Query:  FNRDGSLIVSSSYDGLCRIW
        ++ DG  +VS   D + ++W
Subjt:  FNRDGSLIVSSSYDGLCRIW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCACTCCAAGAGTTCCAAGGCCATGAACAGGGTGTCTCCGACCTTGCTTTCTCCTCTGATTCTCGTTTTCTTGTATCGGCCTCCGACGATAAGACCCTTCGCCTCTGGGA
TGTCTCCTCTGGGTCCCTTATCAAGACCCTTAATGGCCATACCAACTACGTTTTCTGTGTTAACTTCAATCCCCAATCCAACATGATTGTTTCTGGCTCCTTCGACGAGA
CCGTCCGCATTTGGGACGTCAAAACCGGCAAGTGTCTTAAGGTTCTTCCGGCCCACTCCGATCCTGTCACCGGCGTGGATTTTAATCGTGACGGCTCGCTGATTGTTTCT
AGCAGCTATGATGGATTATGTAGAATTTGGGATGCC
mRNA sequenceShow/hide mRNA sequence
CCACTCCAAGAGTTCCAAGGCCATGAACAGGGTGTCTCCGACCTTGCTTTCTCCTCTGATTCTCGTTTTCTTGTATCGGCCTCCGACGATAAGACCCTTCGCCTCTGGGA
TGTCTCCTCTGGGTCCCTTATCAAGACCCTTAATGGCCATACCAACTACGTTTTCTGTGTTAACTTCAATCCCCAATCCAACATGATTGTTTCTGGCTCCTTCGACGAGA
CCGTCCGCATTTGGGACGTCAAAACCGGCAAGTGTCTTAAGGTTCTTCCGGCCCACTCCGATCCTGTCACCGGCGTGGATTTTAATCGTGACGGCTCGCTGATTGTTTCT
AGCAGCTATGATGGATTATGTAGAATTTGGGATGCC
Protein sequenceShow/hide protein sequence
PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVS
SSYDGLCRIWDA