CuGenDBv2

Gene ID	MS011575
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Genome location	scaffold239:2989228..2989515
RNA-Seq Expression	MS011575
Synteny	MS011575
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

QIT04093.1 Ycf2 protein [Luffa aegyptiaca]

3.8e-47

97.92

Show/hide

Query:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE
        LLSCSAGSVVQDLWSLPGPDEKN ITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRF YE
Subjt:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE

YP_009751528.1 Ycf2 protein [Thladiantha dubia]

3.8e-47

97.92

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Query:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE
        LLSCSAGSVVQDLWSLPGPDEKN ITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRF YE
Subjt:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE

YP_009751696.1 Ycf2 protein [Hodgsonia heteroclita]

3.8e-47

97.92

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Query:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE
        LLSCSAGSVVQDLWSLPGPDEKN ITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRF YE
Subjt:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE

YP_009752033.1 Ycf2 protein [Cionosicys macranthus]

3.8e-47

97.92

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Query:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE
        LLSCSAGSVVQDLWSLPGPDEKN ITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRF YE
Subjt:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE

YP_010131137.1 hypothetical protein RF2 [Benincasa hispida]

3.8e-47

97.92

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Query:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE
        LLSCSAGSVVQDLWSLPGPDEKN ITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRF YE
Subjt:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE

TrEMBL top hits

e value

%identity

Alignment

A0A343F2F1 Protein Ycf2

1.8e-47

97.92

Show/hide

Query:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE
        LLSCSAGSVVQDLWSLPGPDEKN ITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRF YE
Subjt:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE

A0A6H0ESM3 Protein Ycf2

1.8e-47

97.92

Show/hide

Query:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE
        LLSCSAGSVVQDLWSLPGPDEKN ITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRF YE
Subjt:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE

A0A6H0ET42 Protein Ycf2

1.8e-47

97.92

Show/hide

Query:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE
        LLSCSAGSVVQDLWSLPGPDEKN ITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRF YE
Subjt:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE

A0A6H0EV63 Protein Ycf2

1.8e-47

97.92

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Query:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE
        LLSCSAGSVVQDLWSLPGPDEKN ITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRF YE
Subjt:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE

A0A6M3RUH1 Protein Ycf2

1.8e-47

97.92

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Query:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE
        LLSCSAGSVVQDLWSLPGPDEKN ITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRF YE
Subjt:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE

SwissProt top hits

e value

%identity

Alignment

A0A379 Protein Ycf2

1.8e-47

91.67

Show/hide

Query:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE
        LLSCSAGSV QDLWSLPGPDEKN ITSYGLVENDSDLVHGLLEVEGAL+GSSRTEKDCS+FDNDRVTLLLRPEPRNPLDM+Q+GSCSI+DQRF YE
Subjt:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE

A6MM80 Protein Ycf2

2.3e-47

92.71

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Query:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE
        LLSCSAGSV QDLWSLPGPDEKN ITSYGLVENDSDLVHGLLEVEGAL+GSSRTEKDCS+FDNDRVTLLLR EPRNPLDM+QNGSCSIVDQRF YE
Subjt:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE

Q09MB4 Protein Ycf2

3.9e-47

92.71

Show/hide

Query:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE
        LLSCSAGSV QDLWSLPGPDEKN ITS GLVENDSDLVHGLLEVEGAL+GSSRTEKDCSRFDNDRVTLLLRPEPRNPLDM+Q GSCSIVDQRF YE
Subjt:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE

Q0G9Q1 Protein Ycf2

2.3e-47

90.62

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Query:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE
        LLSCSAGSV QDLWSLPGPDE+N ITSYGLVENDSDLVHGLL+VEGAL+GSSRTEKDCS+FDNDRVTLLLRPEPRNPLDM+QNGSCSI+DQRF YE
Subjt:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE

Q0ZIV6 Protein Ycf2

2.1e-48

93.75

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Query:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE
        LLSCSAGSV QDLWSLPGPDEKN ITSYGLVENDSDLVHGLLEVEGAL+GSSRTEKDCS+FDNDRVTLLLRPEPRNPLDM+QNGSCSIVDQRF YE
Subjt:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

6.4e-45

86.46

Show/hide

Query:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE
        LLSCSAGSV QDLWSLP PDEKNRITSYG VENDSDLVHGLLEV+GAL+GSSRTEKDCS+FDNDRVTLL R EPR+PL M+Q+GSCSIVDQRF YE
Subjt:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

6.4e-45

86.46

Show/hide

Query:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE
        LLSCSAGSV QDLWSLP PDEKNRITSYG VENDSDLVHGLLEV+GAL+GSSRTEKDCS+FDNDRVTLL R EPR+PL M+Q+GSCSIVDQRF YE
Subjt:  LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE

Sequences

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CDS sequence

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CTTTTGAGTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTACCCGGACCCGATGAAAAAAATAGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCT
AGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACATTGCTTCTTCGGCCCGAAC
CCAGGAATCCCTTAGATATGATACAAAATGGATCTTGTTCTATCGTTGATCAGAGATTTTTCTATGAA

mRNA sequence

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Protein sequence

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LLSCSAGSVVQDLWSLPGPDEKNRITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFFYE

MS011575 (gene) of Bitter gourd (TR) v1 genome