CuGenDBv2

Gene ID	MS011582
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	TPR_REGION domain-containing protein
Genome location	scaffold239:3029439..3030050
RNA-Seq Expression	MS011582
Synteny	MS011582
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001440 - Tetratricopeptide repeat 1 IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019734 - Tetratricopeptide repeat

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6604067.1 hypothetical protein SDJN03_04676, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-89

89.16

Show/hide

Query:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH
        MSPEAMIQVALFILTAAT+LAVRELSKRAFGKVR KNRAILQSSRHF EGTHLLARARSTSQQSQS DYAKKAL EAETALSLSP+DPASHILKALAL+H
Subjt:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH

Query:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLGEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESS
        MGH SSALKSLDVALSPPCLKSLS +E+ KAL+KRAELKIAVNRKRRLDSAVEDLL+AV LG  D K FCLLGQCYEWK+MKDEA+QAFEKALTVDPES+
Subjt:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLGEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESS

Query:  PAR
        PAR
Subjt:  PAR

XP_022132455.1 uncharacterized protein LOC111005306 [Momordica charantia]

3.3e-101

99.51

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Query:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH
        MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH
Subjt:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH

Query:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLGEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESS
        MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLG QDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESS
Subjt:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLGEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESS

Query:  PAR
        PAR
Subjt:  PAR

XP_022950520.1 uncharacterized protein LOC111453603 [Cucurbita moschata]

1.7e-89

89.16

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Query:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH
        MSPEAMIQVALFILTAAT+LAVRELSKRAFGKVR KNRAILQSSRHF EGTHLLARARSTSQQSQS DYAKKAL EAETALSLSP+DPASHILKALAL+H
Subjt:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH

Query:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLGEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESS
        MGH SSALKSLDVALSPPCLKSLS +E+ KAL+KRAELKIAVNRKRRLDSAVEDLL+AV LG  D K FCLLGQCYEWK+MKDEA+QAFEKALTVDPES+
Subjt:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLGEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESS

Query:  PAR
        PAR
Subjt:  PAR

XP_022978825.1 uncharacterized protein LOC111478668 [Cucurbita maxima]

7.2e-88

87.19

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Query:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH
        MSPEA+IQVALFILTAAT+LAVRELSKRAFGKVR KNRAILQSSRHF EGTHLLARARS SQQSQS DYAKKA+ EAETALSLSP+DPASHILKALAL+H
Subjt:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH

Query:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLGEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESS
        MGH SSALKSLD+ALSPPCLKSLS +E+ KAL+KRAELKIAVNRKRRLDSAVEDLL+AV LG  D K FCLLGQCYEWK+MKDEA+QAFEKALTVDPES+
Subjt:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLGEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESS

Query:  PAR
        PAR
Subjt:  PAR

XP_023543662.1 uncharacterized protein LOC111803474 [Cucurbita pepo subsp. pepo]

2.9e-89

88.67

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Query:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH
        +SPEAMIQVALFILTAAT+LAVRELSKRAFGKVR KNRAILQSSRHF EGTHLLARARSTSQQSQS DYAKKAL EAETALSLSP+DPASHILKALAL+H
Subjt:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH

Query:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLGEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESS
        MGHQSSALKSLDVALSPPCLKSLS +E+ KAL+KRAELKIAVNRKRRLDSAVEDLL+AV LG  D K FCLLGQCYEWK+MKDEA++AFEKALTVDPES+
Subjt:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLGEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESS

Query:  PAR
        PAR
Subjt:  PAR

TrEMBL top hits

e value

%identity

Alignment

A0A2P6RPV8 Putative tetratricopeptide-like helical domain-containing protein

5.2e-60

63.9

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Query:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH
        M+ E ++QVAL ILT A   A+ +LSK+A  K+R  NRA LQ++RHF  G+ LL RARST  ++QS  +AK ALTEAE ALSLSP+DP  HILKALALD 
Subjt:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH

Query:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRL--GEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPE
        +GH++SAL+SLD ALSPPC+KSL+ RE G+AL+KRAELK+A+NR+RR+DSAVEDL+EAV L  GE D   FCLLGQCYE K M+DEA++AFE+ALT+D  
Subjt:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRL--GEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPE

Query:  SSPAR
        S+ AR
Subjt:  SSPAR

A0A5N5GR10 TPR_REGION domain-containing protein

4.0e-60

63.41

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Query:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH
        M+PE ++QV L ILT A   A+  LS+    K+R  NRA LQS+RHF  G+HLL R+RST  ++QS  +AK ALTEAE ALSLSP+DP  HILKAL+LD 
Subjt:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH

Query:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLG--EQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPE
        +GH++SALKSLD ALSPPC+KSLS +E G AL+KRAELK+ +NR+RR+DSAVEDL++AV+LG  E D   FCLLGQCYEWK M+DEA  AFE+ALTVD  
Subjt:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLG--EQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPE

Query:  SSPAR
        S  AR
Subjt:  SSPAR

A0A6J1BSI1 uncharacterized protein LOC111005306

1.6e-101

99.51

Show/hide

Query:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH
        MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH
Subjt:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH

Query:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLGEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESS
        MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLG QDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESS
Subjt:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLGEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESS

Query:  PAR
        PAR
Subjt:  PAR

A0A6J1GFZ7 uncharacterized protein LOC111453603

8.3e-90

89.16

Show/hide

Query:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH
        MSPEAMIQVALFILTAAT+LAVRELSKRAFGKVR KNRAILQSSRHF EGTHLLARARSTSQQSQS DYAKKAL EAETALSLSP+DPASHILKALAL+H
Subjt:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH

Query:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLGEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESS
        MGH SSALKSLDVALSPPCLKSLS +E+ KAL+KRAELKIAVNRKRRLDSAVEDLL+AV LG  D K FCLLGQCYEWK+MKDEA+QAFEKALTVDPES+
Subjt:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLGEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESS

Query:  PAR
        PAR
Subjt:  PAR

A0A6J1IRB2 uncharacterized protein LOC111478668

3.5e-88

87.19

Show/hide

Query:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH
        MSPEA+IQVALFILTAAT+LAVRELSKRAFGKVR KNRAILQSSRHF EGTHLLARARS SQQSQS DYAKKA+ EAETALSLSP+DPASHILKALAL+H
Subjt:  MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDH

Query:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLGEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESS
        MGH SSALKSLD+ALSPPCLKSLS +E+ KAL+KRAELKIAVNRKRRLDSAVEDLL+AV LG  D K FCLLGQCYEWK+MKDEA+QAFEKALTVDPES+
Subjt:  MGHQSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLGEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESS

Query:  PAR
        PAR
Subjt:  PAR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G65520.1 Tetratricopeptide repeat (TPR)-like superfamily protein

4.2e-46

53.03

Show/hide

Query:  EAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDHMGH
        E +IQ A+ +LT     A++ LS+R   K R K+RA LQ+ R   + + LLARAR+T ++SQS   AK ALTEA+  +++SP D A HI++ALALD +GH
Subjt:  EAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDHMGH

Query:  QSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRL--GEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPES
         +SALKS D+AL+ P LKSLS  E   AL+KRAE+K+AVNR+RR+DSAVEDL EAVRL  G    + F LLG+CYE+K +K++A+ AF +AL   P S
Subjt:  QSSALKSLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRL--GEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPES

Sequences

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CDS sequence

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AGGATGTCGCCGGAAGCAATGATACAAGTAGCCCTCTTCATCCTAACAGCAGCGACGTTGTTGGCCGTACGTGAACTTTCCAAACGAGCTTTCGGGAAGGTCCGCCCTAA
GAATCGCGCGATTCTCCAGTCGAGCCGCCACTTCTTCGAGGGAACACATCTTCTGGCTCGGGCACGGTCAACCTCTCAACAATCGCAATCCTTCGACTACGCGAAGAAAG
CACTAACCGAAGCCGAAACGGCGCTCTCCCTTTCCCCCAAAGATCCGGCATCTCACATCTTGAAAGCCCTAGCCCTAGATCACATGGGCCATCAGAGCTCCGCGCTTAAA
TCACTCGACGTCGCACTCTCTCCGCCGTGCTTGAAGTCTCTATCCGGCAGAGAACTCGGGAAGGCGTTGATTAAGCGAGCCGAGTTGAAGATCGCCGTGAATCGGAAACG
GCGACTCGACTCGGCGGTGGAAGACTTGTTGGAGGCGGTGAGACTGGGCGAACAAGACCCGAAAGGCTTCTGTCTTTTGGGGCAATGTTACGAGTGGAAGCAAATGAAAG
ACGAGGCCAAGCAGGCTTTCGAAAAGGCCCTAACTGTGGATCCTGAATCCAGCCCGGCCCGT

mRNA sequence

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Protein sequence

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RMSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARSTSQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDHMGHQSSALK
SLDVALSPPCLKSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLGEQDPKGFCLLGQCYEWKQMKDEAKQAFEKALTVDPESSPAR

MS011582 (gene) of Bitter gourd (TR) v1 genome