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MS011584 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011584
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein SKIP34
Genome locationscaffold239:3037828..3038103
RNA-Seq ExpressionMS011584
SyntenyMS011584
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008440533.1 PREDICTED: protein SKIP34 [Cucumis melo]3.6e-3182.29Show/hide
Query:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGH R LFRGS  PYQ+SVP+NG     DNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
XP_011657944.1 protein SKIP34 [Cucumis sativus]5.6e-3283.33Show/hide
Query:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGH R LFRGSL PYQ+SVP+NG     DNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
XP_022133249.1 protein SKIP34 [Momordica charantia]6.6e-41100Show/hide
Query:  MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
XP_022978829.1 protein SKIP34 [Cucurbita maxima]5.6e-3281.25Show/hide
Query:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGH RSLFRGS++P Q+SVP+NG+    DNLRGRLAETESRLAQVRAREA LSR+LEEMKRLVSVMEIL+NYLKR+YRDRQEY VRLL+PLS K
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
XP_023544310.1 protein SKIP34 [Cucurbita pepo subsp. pepo]2.1e-3180.21Show/hide
Query:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGH RSLFRG+++P Q+SVP+NG+    DNLRGRLAETESRLAQVRAREA LSRLLEEMKRLV VMEILENYLKR+YRDRQEY VRLL+P+S K
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
TrEMBL top hitse value%identityAlignment
A0A0A0KIR5 Uncharacterized protein2.7e-3283.33Show/hide
Query:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGH R LFRGSL PYQ+SVP+NG     DNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
A0A1S3B1B8 protein SKIP341.8e-3182.29Show/hide
Query:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGH R LFRGS  PYQ+SVP+NG     DNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
A0A5D3CN14 Protein SKIP341.8e-3182.29Show/hide
Query:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGH R LFRGS  PYQ+SVP+NG     DNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
A0A6J1BVG6 protein SKIP343.2e-41100Show/hide
Query:  MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
A0A6J1IV54 protein SKIP342.7e-3281.25Show/hide
Query:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGH RSLFRGS++P Q+SVP+NG+    DNLRGRLAETESRLAQVRAREA LSR+LEEMKRLVSVMEIL+NYLKR+YRDRQEY VRLL+PLS K
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
SwissProt top hitse value%identityAlignment
Q8GWU7 Protein SKIP341.7e-1552.13Show/hide
Query:  MCNGHQRSLFRGSLTPYQS--SVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MC GH +SL   S    +S     D+  D+LR RLAETE+RL + RAREAELSR LE MKR VSVMEI+E +L+R+++++++   RL SP+S K
Subjt:  MCNGHQRSLFRGSLTPYQS--SVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
Arabidopsis top hitse value%identityAlignment
AT5G65495.1 unknown protein1.2e-1652.13Show/hide
Query:  MCNGHQRSLFRGSLTPYQS--SVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MC GH +SL   S    +S     D+  D+LR RLAETE+RL + RAREAELSR LE MKR VSVMEI+E +L+R+++++++   RL SP+S K
Subjt:  MCNGHQRSLFRGSLTPYQS--SVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTAACGGCCACCAGCGATCTTTGTTCAGAGGTAGCCTTACCCCCTACCAGAGCTCCGTTCCGGACAACGGTGAGGACAATCTACGGGGCCGACTAGCGGAAACCGA
GTCCCGCCTCGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAGATGAAGCGATTAGTCTCTGTTATGGAGATCCTCGAGAACTACCTCAAACGAC
AGTACCGCGACCGCCAAGAATATGCGGTTCGTCTCCTCTCTCCTCTATCTCCAAAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTAACGGCCACCAGCGATCTTTGTTCAGAGGTAGCCTTACCCCCTACCAGAGCTCCGTTCCGGACAACGGTGAGGACAATCTACGGGGCCGACTAGCGGAAACCGA
GTCCCGCCTCGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAGATGAAGCGATTAGTCTCTGTTATGGAGATCCTCGAGAACTACCTCAAACGAC
AGTACCGCGACCGCCAAGAATATGCGGTTCGTCTCCTCTCTCCTCTATCTCCAAAA
Protein sequenceShow/hide protein sequence
MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK