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MS011600 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011600
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationscaffold239:3164749..3165162
RNA-Seq ExpressionMS011600
SyntenyMS011600
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594897.1 hypothetical protein SDJN03_11450, partial [Cucurbita argyrosperma subsp. sororia]1.4e-3974.07Show/hide
Query:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART
        MKIRREIEREIERDLEEEIKGGIY+QALRL RLYQHR K+ DINPP  + KKELLEVNISIK++ GTK++IK+      PPP  SFR RT+RSD TA+RT
Subjt:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART

Query:  VLPEVKRLDWVKSLRSGAAPVVVGKNVGCHRSRIP
        V PEVKRLDWVKSLRS AAP VVGKNVG +R+++P
Subjt:  VLPEVKRLDWVKSLRSGAAPVVVGKNVGCHRSRIP
KAG7026863.1 hypothetical protein SDJN02_10870, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-3974.07Show/hide
Query:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART
        MKIRREIEREIERDLEEEIKGGIY+QALRL RLYQHR K+ DINPP  + KKELLEVNISIK++ GTK++IK+      PPP  SFR RT+RSD TA+RT
Subjt:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART

Query:  VLPEVKRLDWVKSLRSGAAPVVVGKNVGCHRSRIP
        V PEVKRLDWVKSLRS AAP VVGKNVG +R+++P
Subjt:  VLPEVKRLDWVKSLRSGAAPVVVGKNVGCHRSRIP
XP_022962743.1 uncharacterized protein LOC111463142 isoform X1 [Cucurbita moschata]8.4e-4074.07Show/hide
Query:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART
        MKIRREIEREIERDLEEEIKGGIY+QALRL RLYQHR K+ DINPP  + KKELLEVNISIK++ GTK++IK+      PPP  SFR RT+RSD TA+RT
Subjt:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART

Query:  VLPEVKRLDWVKSLRSGAAPVVVGKNVGCHRSRIP
        V PEVKRLDWVKSLRS AAP VVGKNVG +R+++P
Subjt:  VLPEVKRLDWVKSLRSGAAPVVVGKNVGCHRSRIP
XP_022962744.1 uncharacterized protein LOC111463142 isoform X2 [Cucurbita moschata]8.4e-4074.07Show/hide
Query:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART
        MKIRREIEREIERDLEEEIKGGIY+QALRL RLYQHR K+ DINPP  + KKELLEVNISIK++ GTK++IK+      PPP  SFR RT+RSD TA+RT
Subjt:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART

Query:  VLPEVKRLDWVKSLRSGAAPVVVGKNVGCHRSRIP
        V PEVKRLDWVKSLRS AAP VVGKNVG +R+++P
Subjt:  VLPEVKRLDWVKSLRSGAAPVVVGKNVGCHRSRIP
XP_023517469.1 uncharacterized protein LOC111781225 [Cucurbita pepo subsp. pepo]8.4e-4074.07Show/hide
Query:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART
        MKIRREIEREIERDLEEEIKGGIY+QALRL RLYQHR K+ DINPP  + KKELLEVNISIK++ GTK++IK+      PPP  SFR RT+RSD TA+RT
Subjt:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART

Query:  VLPEVKRLDWVKSLRSGAAPVVVGKNVGCHRSRIP
        V PEVKRLDWVKSLRS AAP VVGKNVG +R+++P
Subjt:  VLPEVKRLDWVKSLRSGAAPVVVGKNVGCHRSRIP
TrEMBL top hitse value%identityAlignment
A0A1S3B1F7 uncharacterized protein LOC1034849422.5e-3473.02Show/hide
Query:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART
        MKIRREIE EIERDLEEEIKGGIY+QALRLHRLY HR+ +A I  P  +  KELLEVNISIK+  GTK++I+ETKKEAPPP  ES RPRTSRS+ T +R+
Subjt:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART

Query:  VLPEVKRLDWVKSLRSGAAPV-VVGK
        V PE+KRLDW KSLRS AAPV  VGK
Subjt:  VLPEVKRLDWVKSLRSGAAPV-VVGK
A0A5D3CLA4 Uncharacterized protein2.5e-3473.02Show/hide
Query:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART
        MKIRREIE EIERDLEEEIKGGIY+QALRLHRLY HR+ +A I  P  +  KELLEVNISIK+  GTK++I+ETKKEAPPP  ES RPRTSRS+ T +R+
Subjt:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART

Query:  VLPEVKRLDWVKSLRSGAAPV-VVGK
        V PE+KRLDW KSLRS AAPV  VGK
Subjt:  VLPEVKRLDWVKSLRSGAAPV-VVGK
A0A6J1HFP1 uncharacterized protein LOC111463142 isoform X14.1e-4074.07Show/hide
Query:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART
        MKIRREIEREIERDLEEEIKGGIY+QALRL RLYQHR K+ DINPP  + KKELLEVNISIK++ GTK++IK+      PPP  SFR RT+RSD TA+RT
Subjt:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART

Query:  VLPEVKRLDWVKSLRSGAAPVVVGKNVGCHRSRIP
        V PEVKRLDWVKSLRS AAP VVGKNVG +R+++P
Subjt:  VLPEVKRLDWVKSLRSGAAPVVVGKNVGCHRSRIP
A0A6J1HHY9 uncharacterized protein LOC111463142 isoform X24.1e-4074.07Show/hide
Query:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART
        MKIRREIEREIERDLEEEIKGGIY+QALRL RLYQHR K+ DINPP  + KKELLEVNISIK++ GTK++IK+      PPP  SFR RT+RSD TA+RT
Subjt:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART

Query:  VLPEVKRLDWVKSLRSGAAPVVVGKNVGCHRSRIP
        V PEVKRLDWVKSLRS AAP VVGKNVG +R+++P
Subjt:  VLPEVKRLDWVKSLRSGAAPVVVGKNVGCHRSRIP
A0A6J1KUF8 uncharacterized protein LOC1114972921.3e-3872.59Show/hide
Query:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART
        MKIRREIEREIERDLEEEIKGGIY+QALRL RLYQHR K+ +INPP  + KKELLEVNISIK++ GTK++IKE      PPP  +F  RT+RSD TA+RT
Subjt:  MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAART

Query:  VLPEVKRLDWVKSLRSGAAPVVVGKNVGCHRSRIP
        V PEVKRLDWVKSLRS AAP VVGKNVG +R+++P
Subjt:  VLPEVKRLDWVKSLRSGAAPVVVGKNVGCHRSRIP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G26290.1 unknown protein9.3e-1351.32Show/hide
Query:  KIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKE
        +IR E+E EIER+LE E K GIY  AL+L RLY+ RR+  ++     R+ K +LEVNI+IK++  TK++I E KKE
Subjt:  KIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATCCGGCGTGAAATAGAGAGAGAAATAGAGAGAGATTTAGAGGAAGAGATTAAGGGAGGGATATACGAGCAGGCTCTCCGGCTGCACCGCCTTTATCAGCACCG
GAGAAAAGCCGCCGATATTAACCCGCCGGAGGAGAGAAGAAAGAAGGAGCTTTTGGAGGTAAATATCAGCATCAAACTCCAACGAGGAACCAAGTTGCAAATCAAAGAGA
CCAAGAAAGAGGCGCCGCCGCCGCCGGCGGAAAGTTTCAGGCCGAGGACTTCTCGATCCGACGCCACCGCTGCTCGAACAGTACTTCCGGAGGTGAAAAGGTTAGATTGG
GTGAAGTCTCTCCGGTCGGGTGCTGCACCGGTGGTTGTCGGGAAAAACGTTGGCTGTCACCGGAGTAGAATTCCGGCGCCGGGC
mRNA sequenceShow/hide mRNA sequence
ATGAAGATCCGGCGTGAAATAGAGAGAGAAATAGAGAGAGATTTAGAGGAAGAGATTAAGGGAGGGATATACGAGCAGGCTCTCCGGCTGCACCGCCTTTATCAGCACCG
GAGAAAAGCCGCCGATATTAACCCGCCGGAGGAGAGAAGAAAGAAGGAGCTTTTGGAGGTAAATATCAGCATCAAACTCCAACGAGGAACCAAGTTGCAAATCAAAGAGA
CCAAGAAAGAGGCGCCGCCGCCGCCGGCGGAAAGTTTCAGGCCGAGGACTTCTCGATCCGACGCCACCGCTGCTCGAACAGTACTTCCGGAGGTGAAAAGGTTAGATTGG
GTGAAGTCTCTCCGGTCGGGTGCTGCACCGGTGGTTGTCGGGAAAAACGTTGGCTGTCACCGGAGTAGAATTCCGGCGCCGGGC
Protein sequenceShow/hide protein sequence
MKIRREIEREIERDLEEEIKGGIYEQALRLHRLYQHRRKAADINPPEERRKKELLEVNISIKLQRGTKLQIKETKKEAPPPPAESFRPRTSRSDATAARTVLPEVKRLDW
VKSLRSGAAPVVVGKNVGCHRSRIPAPG