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MS011608 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011608
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold239:3214896..3215126
RNA-Seq ExpressionMS011608
SyntenyMS011608
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.2e-4098.7Show/hide
Query:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC
        LGNAIGLFEDVESNANNFCWGS LRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC
Subjt:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]2.5e-2567.53Show/hide
Query:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC
        LGNAIG F DV+ N   F WG+SLR+RV  D+ KPL RGIK+N+DGPMGGCWIPIQYERLPDF Y CG + H   DC
Subjt:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.9e-2170.59Show/hide
Query:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCG
        LGNA+G FE+ + +  N  WGS+LRVRV  D+ KPL RGIKLNLDGP+GG WIPIQYERLPDF YHCG
Subjt:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCG

XP_042952131.1 uncharacterized protein LOC122289219 [Carya illinoinensis]8.9e-1548.05Show/hide
Query:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC
        +GN IG  E+V+       WG  +R+RVR D+ +PL RG+++ L G  G CWI   YERLP+F Y CG+L H  KDC
Subjt:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC

XP_042958115.1 uncharacterized protein LOC122293643 [Carya illinoinensis]9.8e-1446.75Show/hide
Query:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC
        +GN+IG+ E+++   +   WG  +++R+  DV KPL RG  +NL G  G CW+   YERLP F Y CGRL H  KDC
Subjt:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC

TrEMBL top hitse value%identityAlignment
A0A5B7C0M1 zf-CCHC_4 domain-containing protein (Fragment)1.8e-1341.56Show/hide
Query:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC
        +G+ +G   +V++  ++  WG SLR+RV+ +V+KPL RG++L ++     CW+  +YERLP   Y+CG LDH+++DC
Subjt:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC

A0A6J1BSZ1 uncharacterized protein LOC1110054816.0e-4198.7Show/hide
Query:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC
        LGNAIGLFEDVESNANNFCWGS LRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC
Subjt:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC

A0A6J1DU55 uncharacterized protein LOC1110231351.2e-2567.53Show/hide
Query:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC
        LGNAIG F DV+ N   F WG+SLR+RV  D+ KPL RGIK+N+DGPMGGCWIPIQYERLPDF Y CG + H   DC
Subjt:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC

A0A6J1DX30 uncharacterized protein LOC1110248741.4e-2170.59Show/hide
Query:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCG
        LGNA+G FE+ + +  N  WGS+LRVRV  D+ KPL RGIKLNLDGP+GG WIPIQYERLPDF YHCG
Subjt:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCG

A0A6P9EID8 uncharacterized protein LOC1183488564.8e-1448.05Show/hide
Query:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC
        +GN IG+ E+V+   +   WG  LR+RVR ++ +PL RGI + L G  G  WI   YERLP+F Y CG+L H  KDC
Subjt:  LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCGGTAATGCTATTGGTCTCTTTGAGGATGTGGAGAGTAATGCAAACAATTTTTGTTGGGGTTCTAGTCTCCGGGTTCGTGTCAGGTTTGATGTTATGAAACCTCTACA
TCGTGGAATCAAGCTCAATCTTGATGGACCAATGGGCGGTTGTTGGATACCGATACAATATGAACGTCTGCCGGACTTCCGCTATCATTGTGGGCGTTTGGATCATATTC
TCAAGGATTGT
mRNA sequenceShow/hide mRNA sequence
CTCGGTAATGCTATTGGTCTCTTTGAGGATGTGGAGAGTAATGCAAACAATTTTTGTTGGGGTTCTAGTCTCCGGGTTCGTGTCAGGTTTGATGTTATGAAACCTCTACA
TCGTGGAATCAAGCTCAATCTTGATGGACCAATGGGCGGTTGTTGGATACCGATACAATATGAACGTCTGCCGGACTTCCGCTATCATTGTGGGCGTTTGGATCATATTC
TCAAGGATTGT
Protein sequenceShow/hide protein sequence
LGNAIGLFEDVESNANNFCWGSSLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC