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MS011609 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011609
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold239:3220380..3220691
RNA-Seq ExpressionMS011609
SyntenyMS011609
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAY58380.1 hypothetical protein CUMW_186600 [Citrus unshiu]7.5e-0935.56Show/hide
Query:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMPLPSSPFLSFQDSLSEISNSLNPNDTELAACTCWALWSDRN
        LPT+ N  ++ +V  PLC  C    ET+ HVLF C+ ++K WK    +  +      +  D L E+  S N N+ E+    CWA+W  RN
Subjt:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMPLPSSPFLSFQDSLSEISNSLNPNDTELAACTCWALWSDRN

XP_018823930.2 uncharacterized protein LOC108993460 [Juglans regia]2.9e-0836.56Show/hide
Query:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMPLPSSPFLSFQDSLSEISNSLNPNDTELAACTCWALWSDRNSLL
        LPT  NL K+ ++DSP+C  C   PET  HVL+ CK A+ +W     ++    +   SF D LS + ++L P D    A T   +W  RN  +
Subjt:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMPLPSSPFLSFQDSLSEISNSLNPNDTELAACTCWALWSDRNSLL

XP_018835827.1 uncharacterized protein LOC109002494 [Juglans regia]3.7e-0835.48Show/hide
Query:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMPLPSSPFLSFQDSLSEISNSLNPNDTELAACTCWALWSDRNSLL
        LPT  NL K+ ++++P+C  C TLPET  H L+ CK A+ +W     ++    +  + F D L E+  +L P D    A T   +W  RN L+
Subjt:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMPLPSSPFLSFQDSLSEISNSLNPNDTELAACTCWALWSDRNSLL

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]1.2e-0938Show/hide
Query:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMPLPSSPF-LSFQDSLSEISNSLNPNDTELAACTCWALWSDRNSLLQNKQAP
        +P++ NL K+G+  +P C  C    ET+ H LF CK A+++W  LLP+   P   F  S QD L  +  SL+  D +L     WA+W+DRN++   +Q P
Subjt:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMPLPSSPF-LSFQDSLSEISNSLNPNDTELAACTCWALWSDRNSLLQNKQAP

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.6e-1440.95Show/hide
Query:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMP-LPSSPFLSFQDSLSEISNSLNPNDTELAACTCWALWSDRNSLLQNKQAP
        +PT  NL  +G+ + P C+ C    E+ IH  FHCK AR+IW+ L P +  L +   +SF +  S ++  L P D  LAA T W +W+DRNSL+  KQ  
Subjt:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMP-LPSSPFLSFQDSLSEISNSLNPNDTELAACTCWALWSDRNSLLQNKQAP

Query:  TIEAK
         +E K
Subjt:  TIEAK

TrEMBL top hitse value%identityAlignment
A0A2H5Q163 zf-RVT domain-containing protein3.6e-0935.56Show/hide
Query:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMPLPSSPFLSFQDSLSEISNSLNPNDTELAACTCWALWSDRN
        LPT+ N  ++ +V  PLC  C    ET+ HVLF C+ ++K WK    +  +      +  D L E+  S N N+ E+    CWA+W  RN
Subjt:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMPLPSSPFLSFQDSLSEISNSLNPNDTELAACTCWALWSDRN

A0A2N9GZG3 Sodium/hydrogen exchanger2.5e-1033.33Show/hide
Query:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMPLPSSPFLSFQDSLSEISNSLNPNDTELAACTCWALWSDRNSLLQNKQAPT
        LP+ FNL+KK V++ P+C  C  LPE  +H L+ C  A+  W        +  S F +F D   ++     P D E+ + TCWA+W+ RN +  N+    
Subjt:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMPLPSSPFLSFQDSLSEISNSLNPNDTELAACTCWALWSDRNSLLQNKQAPT

Query:  IE
        ++
Subjt:  IE

A0A2N9HK89 Uncharacterized protein2.5e-1033.33Show/hide
Query:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMPLPSSPFLSFQDSLSEISNSLNPNDTELAACTCWALWSDRNSLLQNKQAPT
        LP+ FNL+KK V++ P+C  C  LPE  +H L+ C  A+  W        +  S F +F D   ++     P D E+ + TCWA+W+ RN +  N+    
Subjt:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMPLPSSPFLSFQDSLSEISNSLNPNDTELAACTCWALWSDRNSLLQNKQAPT

Query:  IE
        ++
Subjt:  IE

A0A6J1CTE3 uncharacterized protein LOC1110145785.6e-1038Show/hide
Query:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMPLPSSPF-LSFQDSLSEISNSLNPNDTELAACTCWALWSDRNSLLQNKQAP
        +P++ NL K+G+  +P C  C    ET+ H LF CK A+++W  LLP+   P   F  S QD L  +  SL+  D +L     WA+W+DRN++   +Q P
Subjt:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMPLPSSPF-LSFQDSLSEISNSLNPNDTELAACTCWALWSDRNSLLQNKQAP

A0A6J1DX30 uncharacterized protein LOC1110248747.6e-1540.95Show/hide
Query:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMP-LPSSPFLSFQDSLSEISNSLNPNDTELAACTCWALWSDRNSLLQNKQAP
        +PT  NL  +G+ + P C+ C    E+ IH  FHCK AR+IW+ L P +  L +   +SF +  S ++  L P D  LAA T W +W+DRNSL+  KQ  
Subjt:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMP-LPSSPFLSFQDSLSEISNSLNPNDTELAACTCWALWSDRNSLLQNKQAP

Query:  TIEAK
         +E K
Subjt:  TIEAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein7.0e-0529.63Show/hide
Query:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRL---LPKMPLPSSPFLSFQDSLSE--ISNSLNPNDTELAACTCWALWSDRNSLL-Q
        LP    L ++ +  +  C+ C   PETS H+LFHC  A ++W      L  +P+  +P L   + L +  +   +  +   L    CW +W  RN L+ Q
Subjt:  LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRL---LPKMPLPSSPFLSFQDSLSE--ISNSLNPNDTELAACTCWALWSDRNSLL-Q

Query:  NKQAPTIE
        N     IE
Subjt:  NKQAPTIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGCCAACATTGTTCAATTTACAGAAGAAGGGGGTTGTGGATTCACCTTTATGTTCTTGCTGCCCCACCTTGCCGGAGACATCAATTCACGTGCTATTCCATTGTAAATG
TGCAAGGAAAATTTGGAAGAGGCTGCTCCCGAAGATGCCACTCCCCTCTAGCCCTTTCCTGTCATTTCAGGATTCTTTGAGTGAAATTTCTAACAGCCTTAATCCGAATG
ACACAGAGTTAGCGGCTTGTACCTGTTGGGCCCTCTGGTCTGATCGGAACTCTTTGCTGCAAAACAAGCAAGCCCCTACGATTGAAGCTAAA
mRNA sequenceShow/hide mRNA sequence
CTGCCAACATTGTTCAATTTACAGAAGAAGGGGGTTGTGGATTCACCTTTATGTTCTTGCTGCCCCACCTTGCCGGAGACATCAATTCACGTGCTATTCCATTGTAAATG
TGCAAGGAAAATTTGGAAGAGGCTGCTCCCGAAGATGCCACTCCCCTCTAGCCCTTTCCTGTCATTTCAGGATTCTTTGAGTGAAATTTCTAACAGCCTTAATCCGAATG
ACACAGAGTTAGCGGCTTGTACCTGTTGGGCCCTCTGGTCTGATCGGAACTCTTTGCTGCAAAACAAGCAAGCCCCTACGATTGAAGCTAAA
Protein sequenceShow/hide protein sequence
LPTLFNLQKKGVVDSPLCSCCPTLPETSIHVLFHCKCARKIWKRLLPKMPLPSSPFLSFQDSLSEISNSLNPNDTELAACTCWALWSDRNSLLQNKQAPTIEAK