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MS011672 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011672
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontranscription factor PRE6-like
Genome locationscaffold364:225420..226221
RNA-Seq ExpressionMS011672
SyntenyMS011672
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146747.1 transcription factor PRE6 [Cucumis sativus]1.0e-2882.11Show/hide
Query:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRN-RRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF
        MSSRRSSRSRNS + S  ISDD+IADLVSKLQRLIPE+RN R S K +AS+VLQETCNYIR+LH+EVDDLSERLSQLLAATEN SAEA IIRSLF
Subjt:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRN-RRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF

XP_008465587.1 PREDICTED: transcription factor PRE6-like [Cucumis melo]1.2e-2984.21Show/hide
Query:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRN-RRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF
        MSSRRSSRSRNS++ S  ISDD+IADLVSKLQRLIPE+RN R S KV+AS+VLQETCNYIR+LH+EVDDLSERLSQLLAATEN SAEAAIIRSLF
Subjt:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRN-RRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF

XP_022151333.1 transcription factor PRE6-like [Momordica charantia]1.1e-38100Show/hide
Query:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF
        MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF
Subjt:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF

XP_022946595.1 transcription factor PRE6-like [Cucurbita moschata]1.8e-3086.17Show/hide
Query:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF
        MSSRRSSRSRNS+   A ISDD+I+DLVSKLQRLIPEIRN RS KV+ASKVLQETCNYIR+LH+EVDDLSERLSQLLAATEN SAEAAIIRSLF
Subjt:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF

XP_023546056.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]4.1e-3085.11Show/hide
Query:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF
        MSSRRSSRSRN++   A ISDD+I+DLVSKLQRLIPEIRN RS KV+ASKVLQETCNYIR+LH+EVDDLSERLSQLLAATEN SAEAAIIRSLF
Subjt:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF

TrEMBL top hitse value%identityAlignment
A0A1S3CPL2 transcription factor PRE6-like5.8e-3084.21Show/hide
Query:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRN-RRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF
        MSSRRSSRSRNS++ S  ISDD+IADLVSKLQRLIPE+RN R S KV+AS+VLQETCNYIR+LH+EVDDLSERLSQLLAATEN SAEAAIIRSLF
Subjt:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRN-RRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF

A0A5D3BPI2 Transcription factor PRE6-like5.8e-3084.21Show/hide
Query:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRN-RRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF
        MSSRRSSRSRNS++ S  ISDD+IADLVSKLQRLIPE+RN R S KV+AS+VLQETCNYIR+LH+EVDDLSERLSQLLAATEN SAEAAIIRSLF
Subjt:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRN-RRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF

A0A6J1DBW8 transcription factor PRE6-like5.2e-39100Show/hide
Query:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF
        MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF
Subjt:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF

A0A6J1G4C0 transcription factor PRE6-like8.9e-3186.17Show/hide
Query:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF
        MSSRRSSRSRNS+   A ISDD+I+DLVSKLQRLIPEIRN RS KV+ASKVLQETCNYIR+LH+EVDDLSERLSQLLAATEN SAEAAIIRSLF
Subjt:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF

A0A6J1KGK3 transcription factor PRE6-like8.9e-3186.17Show/hide
Query:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF
        MSSRRSSRSRNS+   A ISDD+I+DLVSKLQRLIPEIRN RS KV+ASKVLQETCNYIR+LH+EVDDLSERLSQLLAATEN SAEAAIIRSLF
Subjt:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI71.1e-2263.64Show/hide
Query:  SSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL
        SSRSR+ AS +A I+D++I DLVSKLQ L+PE R R +D+V +++VLQETC+YIRSLH+EVDDLSERL++LLAA +  +A+AA+IR L
Subjt:  SSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL

B8APB5 Transcription factor ILI66.0e-2469.89Show/hide
Query:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL
        MSSRR SRSR S   S+ I+D++I+DLVSKLQ L+PE R R +D+V +S+VLQETCNYIRSLHQEVDDLSERLS+LLA ++  SA+AAIIRSL
Subjt:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL

Q0DUR2 Transcription factor ILI66.0e-2469.89Show/hide
Query:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL
        MSSRR SRSR S   S+ I+D++I+DLVSKLQ L+PE R R +D+V +S+VLQETCNYIRSLHQEVDDLSERLS+LLA ++  SA+AAIIRSL
Subjt:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL

Q338G6 Transcription factor ILI74.3e-2262.5Show/hide
Query:  SSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL
        S RSR+ AS +A I+D++I DLVSKLQ L+PE R R +D+V +++VLQETC+YIRSLH+EVDDLSERL++LLAA +  +A+AA+IR L
Subjt:  SSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL

Q8GW32 Transcription factor PRE64.3e-3078.49Show/hide
Query:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL
        MSSRRSSRSR S   S+ ISDD+I+DLVSKLQ LIPE+R RRSDKV+ASKVLQETCNYIR+LH+EVDDLS+RLS+LLA+T++ SAEAAIIRSL
Subjt:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.0e-3178.49Show/hide
Query:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL
        MSSRRSSRSR S   S+ ISDD+I+DLVSKLQ LIPE+R RRSDKV+ASKVLQETCNYIR+LH+EVDDLS+RLS+LLA+T++ SAEAAIIRSL
Subjt:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 17.5e-2264.89Show/hide
Query:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIR-NRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL
        MS RR SRSR S+  S  IS+D+I DL+ KLQ+L+PE+R +RRSDKV+A++VLQ+TCNYIR+LH+EVDDLSERLS+LLA ++  +A+AA+IRSL
Subjt:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIR-NRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.2e-2262.77Show/hide
Query:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEI-RNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL
        MS+RRS ++ N    ++ ISDD++ DLVSKL++ +PEI   RRSDKV+ASKVLQETCNYIR LH+EVD+LS+RLSQLL + +  S EAA+IRSL
Subjt:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEI-RNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL

AT5G15160.1 BANQUO 22.0e-2264.04Show/hide
Query:  SSRSRNSASISAHISDDEIADLVSKLQRLIPEIR-NRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL
        SSR    AS S+ ISDD+I DL+SKL++ IPEIR NRRS+ V+ASKVLQETCNYIR+L++E DDLS+RL+QLL + +  S +AA+IRSL
Subjt:  SSRSRNSASISAHISDDEIADLVSKLQRLIPEIR-NRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.7e-2161.7Show/hide
Query:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEI-RNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL
        MS+RRS +S    S +  ISD+++ DLVSKL++++PEI + RRSDK +ASKVLQETCNYIR+L++EVD+LSERLSQLL + +  S EAA+IRSL
Subjt:  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEI-RNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGCAGAAGATCATCGCGTTCTAGAAACTCCGCTTCTATTTCTGCTCATATCTCTGATGACGAGATTGCCGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCTGA
GATTCGTAACAGGCGCTCCGATAAGGTGGCAGCTTCAAAAGTGCTACAGGAAACATGCAACTACATAAGGAGTTTACATCAGGAAGTGGATGATTTAAGTGAGCGATTGT
CTCAGCTTTTGGCCGCAACTGAAAACGGCAGTGCCGAGGCAGCCATTATTAGGAGTTTATTC
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGCAGAAGATCATCGCGTTCTAGAAACTCCGCTTCTATTTCTGCTCATATCTCTGATGACGAGATTGCCGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCTGA
GATTCGTAACAGGCGCTCCGATAAGGTGGCAGCTTCAAAAGTGCTACAGGAAACATGCAACTACATAAGGAGTTTACATCAGGAAGTGGATGATTTAAGTGAGCGATTGT
CTCAGCTTTTGGCCGCAACTGAAAACGGCAGTGCCGAGGCAGCCATTATTAGGAGTTTATTC
Protein sequenceShow/hide protein sequence
MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRNRRSDKVAASKVLQETCNYIRSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLF