; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS011746 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011746
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionthylakoid lumenal 16.5 kDa protein, chloroplastic
Genome locationscaffold11:356417..358822
RNA-Seq ExpressionMS011746
SyntenyMS011746
Gene Ontology termsGO:0010206 - photosystem II repair (biological process)
InterPro domainsIPR038862 - Chloroplast thylakoid lumenal protein MPH2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599393.1 Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.8e-9885.17Show/hide
Query:  MATAFLSTANTFH------------SSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADD
        MAT+FLSTANTFH            SSSSS PL RSRF CL+C NNA RL+ICKG NDPPSQIP LTKR+LSICF+S+FIFPLVG+G SDANAAILEADD
Subjt:  MATAFLSTANTFH------------SSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADD

Query:  DEELLEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISS
        DEELLEKVKKDRKKRLERQGVISSANKE  YLQEVVYKLSKVGQAIDNNDFSTASSVLGGS+DADWVRNAN AFNKLSSSPEEKSEVD FNSS+ASLISS
Subjt:  DEELLEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISS

Query:  VTQNDVESSKTAFVASASALEKWTALAGLIGQLKGL
        VTQNDV+SSKTAFVASASALEKWTALAGL+GQLKGL
Subjt:  VTQNDVESSKTAFVASASALEKWTALAGLIGQLKGL

KAG7030378.1 Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]7.6e-9985.96Show/hide
Query:  MATAFLSTANTFH-----------SSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADDD
        MAT+FLSTANTFH           SSSSSSPL RSRF CL+C NNA RL+ICKG NDPPSQIP LTKR+LSICF+S+FIFPLVG+G SDANAAILEADDD
Subjt:  MATAFLSTANTFH-----------SSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADDD

Query:  EELLEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSV
        EELLEKVKKDRKKRLERQGVISSANKE  YLQEVVYKLSKVGQAIDNNDFSTASSVLGGS+DADWVRNAN AFNKLSSSPEEKSEVD FNSS+ASLISSV
Subjt:  EELLEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSV

Query:  TQNDVESSKTAFVASASALEKWTALAGLIGQLKGL
        TQNDV+SSKTAFVASASALEKWTALAGL+GQLKGL
Subjt:  TQNDVESSKTAFVASASALEKWTALAGLIGQLKGL

XP_022143243.1 thylakoid lumenal 16.5 kDa protein, chloroplastic [Momordica charantia]6.6e-11198.66Show/hide
Query:  MATAFLSTANTFHSSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADDDEELLEKVKKDR
        MA   LSTANTFHSSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADDDEELLEKVKKDR
Subjt:  MATAFLSTANTFHSSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADDDEELLEKVKKDR

Query:  KKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSVTQNDVESSKTA
        KKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSVTQNDVESSKTA
Subjt:  KKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSVTQNDVESSKTA

Query:  FVASASALEKWTALAGLIGQLKGL
        FVASASALEKWTALAGLIGQLKGL
Subjt:  FVASASALEKWTALAGLIGQLKGL

XP_023545851.1 thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo]2.9e-9886.64Show/hide
Query:  MATAFLSTANTFH--------SSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADDDEEL
        MAT+FLSTANTFH        SSSSS PL RSRF CL+C NNA RL+ICKG NDPPSQIP LTKR+LSICF+S FIFPLVG+G SDANAAILEADDDEEL
Subjt:  MATAFLSTANTFH--------SSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADDDEEL

Query:  LEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSVTQN
        LEKVKKDRKKRLERQGVISSANKE  YLQEVVYKLSKVGQAIDNNDFSTASSVLGGS+DADWVRNAN AFNKLSSSPEEKSEVD FNSS+ASLISSVTQN
Subjt:  LEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSVTQN

Query:  DVESSKTAFVASASALEKWTALAGLIGQLKGL
        DV+SSKTAFVASASALEKWTALAGL+GQLKGL
Subjt:  DVESSKTAFVASASALEKWTALAGLIGQLKGL

XP_038889145.1 thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Benincasa hispida]2.8e-10186.5Show/hide
Query:  MATAFLSTANTFH-------------SSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEAD
        MAT+FLSTANTFH             SSSSS PL RSRFGCLHCHNN  RL+ICKGINDPPSQIPALTKR+LSICF+S+FIFPLVG+G SDANAAILEAD
Subjt:  MATAFLSTANTFH-------------SSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEAD

Query:  DDEELLEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLIS
        DDEELLEKVKKDRKKRLERQGVISSANKE  YLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNAN AFNKLSSSPEEKSEVD FNSS+ASLIS
Subjt:  DDEELLEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLIS

Query:  SVTQNDVESSKTAFVASASALEKWTALAGLIGQLKGL
        SVTQNDVESSKTAFVASASALEKWTA+ GL+GQLKGL
Subjt:  SVTQNDVESSKTAFVASASALEKWTALAGLIGQLKGL

TrEMBL top hitse value%identityAlignment
A0A0A0LI29 Uncharacterized protein1.5e-9783.19Show/hide
Query:  MATAFLSTANTFHSSSSSS--------------PLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEA
        MATAFLSTANTFHSS+ SS              PL RSRFGCL+CHNN  RL+ICK  +DPPS+IPALTKRTLSICF+S+FIFPLVG+G SDANAAILEA
Subjt:  MATAFLSTANTFHSSSSSS--------------PLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEA

Query:  DDDEELLEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLI
        DDDEELLEKVKKDRKKRLE+QGVISSANKE  YLQE+VYKLSKVGQAIDNNDFSTASSVLGGSSDADWV+ ANSAFNKLSSSPEEKSEVD FNSS+ASLI
Subjt:  DDDEELLEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLI

Query:  SSVTQNDVESSKTAFVASASALEKWTALAGLIGQLKGL
        SSVT+NDVESSKTAFVASASA EKWTALAGL+GQLKGL
Subjt:  SSVTQNDVESSKTAFVASASALEKWTALAGLIGQLKGL

A0A5A7V8J2 Thylakoid lumenal 16.5 kDa protein5.0e-9682.91Show/hide
Query:  MATAFLSTANTFHSSS----------SSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADDDE
        MAT+FLSTANTFHSS+          SS PL RSRFGCL+CHNN  RL+ICK  +DPPS+IPALTKRTLSICF+S+FIFPLVG+G SDANAAILEADDDE
Subjt:  MATAFLSTANTFHSSS----------SSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADDDE

Query:  ELLEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSVT
        ELLEKVKKDRKKRLE+QGVISSANKE  YLQE+VYKLSKVGQAID+NDF+TASSVLGGSSDADWV+NAN AFNKLSSSPEEKSEVD FNSS+ASLISSVT
Subjt:  ELLEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSVT

Query:  QNDVESSKTAFVASASALEKWTALAGLIGQLKGL
        ++DVESSKTAFVASASA EKWTALAGL+GQLKGL
Subjt:  QNDVESSKTAFVASASALEKWTALAGLIGQLKGL

A0A6J1CQ84 thylakoid lumenal 16.5 kDa protein, chloroplastic3.2e-11198.66Show/hide
Query:  MATAFLSTANTFHSSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADDDEELLEKVKKDR
        MA   LSTANTFHSSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADDDEELLEKVKKDR
Subjt:  MATAFLSTANTFHSSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADDDEELLEKVKKDR

Query:  KKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSVTQNDVESSKTA
        KKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSVTQNDVESSKTA
Subjt:  KKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSVTQNDVESSKTA

Query:  FVASASALEKWTALAGLIGQLKGL
        FVASASALEKWTALAGLIGQLKGL
Subjt:  FVASASALEKWTALAGLIGQLKGL

A0A6J1G2S1 thylakoid lumenal 16.5 kDa protein, chloroplastic1.7e-9684.32Show/hide
Query:  MATAFLSTANTFH------------SSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADD
        MAT+FLSTANTFH            SSSSS PL RSRF CL+  NNA RL+ICKG NDPPSQIP LTKR+LSICF+S+FIFPLVG+G SDANAAILEADD
Subjt:  MATAFLSTANTFH------------SSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADD

Query:  DEELLEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISS
        DEELLEKVKKDRKKRLERQGVISSANKE  YLQEVVYKLSKVGQAIDNNDFSTASSVLGGS+DADWVRNAN AFNKLSSSPEEKSEVD FNSS+ASLISS
Subjt:  DEELLEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISS

Query:  VTQNDVESSKTAFVASASALEKWTALAGLIGQLKGL
        VTQNDV+SSKTAFVA ASALEKWTALAGL+GQLKGL
Subjt:  VTQNDVESSKTAFVASASALEKWTALAGLIGQLKGL

A0A6J1KEL3 thylakoid lumenal 16.5 kDa protein, chloroplastic1.0e-9683.83Show/hide
Query:  MATAFLSTANTFH-----------SSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADDD
        MAT+FLSTANTFH           SSSSS PL RSRF CL+C NNA R +ICKG NDPPS+IP+LTKR+LSICF+S+FIFPLVG+G SDANAAILEADDD
Subjt:  MATAFLSTANTFH-----------SSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADDD

Query:  EELLEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSV
        EELLEKVKKDRKKRLERQGVISSANKE  YLQEVV+KLSKVGQAIDNNDFSTASSVLGGS+DADWVRNAN AFNKLS+SPEEKSEVD FNSS+ASLISSV
Subjt:  EELLEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSV

Query:  TQNDVESSKTAFVASASALEKWTALAGLIGQLKGL
        TQNDV+SSKTAFVASASALEKWTALAGL+GQLKGL
Subjt:  TQNDVESSKTAFVASASALEKWTALAGLIGQLKGL

SwissProt top hitse value%identityAlignment
O22773 Thylakoid lumenal 16.5 kDa protein, chloroplastic5.7e-4964.53Show/hide
Query:  KRTLSICFVSTFI-FPLVG--RGSSDANAAILEADDDEELLEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDA
        +R LS+ F+S+ +   LV   R   DANAAILEADDDEELLEKVK+DRKKR+ERQ V++SA KE  YLQ++VYKLSKVGQAI+NND   A  VLG   D 
Subjt:  KRTLSICFVSTFI-FPLVG--RGSSDANAAILEADDDEELLEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDA

Query:  DWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSVTQNDVESSKTAFVASASALEKWTALAGLIGQLKGL
        +WV+  N AF KLS+SPEE +EV+ FNSS+ASLI+SV +ND+ESSK AFV+SA A EKWT L GL+ QLKGL
Subjt:  DWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSVTQNDVESSKTAFVASASALEKWTALAGLIGQLKGL

Arabidopsis top hitse value%identityAlignment
AT4G02530.1 chloroplast thylakoid lumen protein4.1e-5064.53Show/hide
Query:  KRTLSICFVSTFI-FPLVG--RGSSDANAAILEADDDEELLEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDA
        +R LS+ F+S+ +   LV   R   DANAAILEADDDEELLEKVK+DRKKR+ERQ V++SA KE  YLQ++VYKLSKVGQAI+NND   A  VLG   D 
Subjt:  KRTLSICFVSTFI-FPLVG--RGSSDANAAILEADDDEELLEKVKKDRKKRLERQGVISSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDA

Query:  DWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSVTQNDVESSKTAFVASASALEKWTALAGLIGQLKGL
        +WV+  N AF KLS+SPEE +EV+ FNSS+ASLI+SV +ND+ESSK AFV+SA A EKWT L GL+ QLKGL
Subjt:  DWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSVTQNDVESSKTAFVASASALEKWTALAGLIGQLKGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACAGCCTTCCTTTCAACAGCAAACACGTTCCATTCTTCTTCTTCTTCTTCTCCATTGTCAAGATCAAGATTTGGTTGCCTTCACTGCCATAATAACGCCGGGCG
ATTGATTATCTGCAAGGGAATTAATGACCCACCATCGCAAATTCCAGCTTTGACCAAGAGGACCCTCTCAATATGCTTTGTTTCCACCTTCATTTTCCCTCTGGTGGGTC
GAGGCTCCTCCGATGCAAATGCTGCGATTCTTGAAGCCGATGATGATGAGGAGCTTCTGGAAAAGGTGAAGAAGGATAGAAAGAAGAGGCTCGAAAGACAAGGGGTTATC
AGTTCAGCCAACAAAGAAACAGCATACCTCCAGGAAGTTGTGTACAAGCTGAGCAAAGTAGGCCAAGCCATTGATAATAATGATTTCTCAACAGCAAGTTCAGTTCTTGG
GGGTAGTAGTGATGCAGATTGGGTTCGGAATGCCAATTCGGCCTTCAACAAGCTGAGCTCAAGTCCTGAAGAGAAATCTGAGGTGGACACATTCAATTCCTCTATAGCTT
CGTTAATCTCATCAGTTACTCAGAATGATGTTGAGTCCTCCAAAACTGCCTTTGTAGCATCTGCCAGTGCACTTGAGAAATGGACGGCCTTGGCAGGGCTTATTGGACAG
CTGAAGGGGCTT
mRNA sequenceShow/hide mRNA sequence
ATGGCAACAGCCTTCCTTTCAACAGCAAACACGTTCCATTCTTCTTCTTCTTCTTCTCCATTGTCAAGATCAAGATTTGGTTGCCTTCACTGCCATAATAACGCCGGGCG
ATTGATTATCTGCAAGGGAATTAATGACCCACCATCGCAAATTCCAGCTTTGACCAAGAGGACCCTCTCAATATGCTTTGTTTCCACCTTCATTTTCCCTCTGGTGGGTC
GAGGCTCCTCCGATGCAAATGCTGCGATTCTTGAAGCCGATGATGATGAGGAGCTTCTGGAAAAGGTGAAGAAGGATAGAAAGAAGAGGCTCGAAAGACAAGGGGTTATC
AGTTCAGCCAACAAAGAAACAGCATACCTCCAGGAAGTTGTGTACAAGCTGAGCAAAGTAGGCCAAGCCATTGATAATAATGATTTCTCAACAGCAAGTTCAGTTCTTGG
GGGTAGTAGTGATGCAGATTGGGTTCGGAATGCCAATTCGGCCTTCAACAAGCTGAGCTCAAGTCCTGAAGAGAAATCTGAGGTGGACACATTCAATTCCTCTATAGCTT
CGTTAATCTCATCAGTTACTCAGAATGATGTTGAGTCCTCCAAAACTGCCTTTGTAGCATCTGCCAGTGCACTTGAGAAATGGACGGCCTTGGCAGGGCTTATTGGACAG
CTGAAGGGGCTT
Protein sequenceShow/hide protein sequence
MATAFLSTANTFHSSSSSSPLSRSRFGCLHCHNNAGRLIICKGINDPPSQIPALTKRTLSICFVSTFIFPLVGRGSSDANAAILEADDDEELLEKVKKDRKKRLERQGVI
SSANKETAYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANSAFNKLSSSPEEKSEVDTFNSSIASLISSVTQNDVESSKTAFVASASALEKWTALAGLIGQ
LKGL