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MS011765 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011765
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA/RNA-binding protein Alba-like protein
Genome locationscaffold11:517235..518915
RNA-Seq ExpressionMS011765
SyntenyMS011765
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599408.1 hypothetical protein SDJN03_09186, partial [Cucurbita argyrosperma subsp. sororia]9.4e-5793.13Show/hide
Query:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+SMNLG D YKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERGDTGDTDEQS
        EILLGKTENFDELMAAAAEER +TGD DEQS
Subjt:  EILLGKTENFDELMAAAAEERGDTGDTDEQS

XP_008457716.1 PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo]5.5e-5793.13Show/hide
Query:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NL  D +KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERGDTGDTDEQS
        EILLGKTENFDELMAAAAEERG+ GD DEQS
Subjt:  EILLGKTENFDELMAAAAEERGDTGDTDEQS

XP_022143001.1 uncharacterized protein At2g34160-like [Momordica charantia]9.7e-6298.47Show/hide
Query:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGL VEKKIATSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERGDTGDTDEQS
        EILLGKTENFDELMAAAAEERGDTGDTDEQS
Subjt:  EILLGKTENFDELMAAAAEERGDTGDTDEQS

XP_022946216.1 uncharacterized protein At2g34160-like [Cucurbita moschata]9.4e-5793.13Show/hide
Query:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+SMNLG D YKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERGDTGDTDEQS
        EILLGKTENFDELMAAAAEER +TGD DEQS
Subjt:  EILLGKTENFDELMAAAAEERGDTGDTDEQS

XP_023547053.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo]2.7e-5692.37Show/hide
Query:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+S+NLG D YKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERGDTGDTDEQS
        EILLGKTENFDELMAAAAEER +TGD DEQS
Subjt:  EILLGKTENFDELMAAAAEERGDTGDTDEQS

TrEMBL top hitse value%identityAlignment
A0A1S3C651 uncharacterized protein At2g34160-like2.7e-5793.13Show/hide
Query:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NL  D +KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERGDTGDTDEQS
        EILLGKTENFDELMAAAAEERG+ GD DEQS
Subjt:  EILLGKTENFDELMAAAAEERGDTGDTDEQS

A0A5D3BH52 DNA/RNA-binding protein Alba-like protein2.7e-5793.13Show/hide
Query:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NL  D +KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERGDTGDTDEQS
        EILLGKTENFDELMAAAAEERG+ GD DEQS
Subjt:  EILLGKTENFDELMAAAAEERGDTGDTDEQS

A0A6J1CNW3 uncharacterized protein At2g34160-like4.7e-6298.47Show/hide
Query:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGL VEKKIATSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERGDTGDTDEQS
        EILLGKTENFDELMAAAAEERGDTGDTDEQS
Subjt:  EILLGKTENFDELMAAAAEERGDTGDTDEQS

A0A6J1G312 uncharacterized protein At2g34160-like4.5e-5793.13Show/hide
Query:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+SMNLG D YKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERGDTGDTDEQS
        EILLGKTENFDELMAAAAEER +TGD DEQS
Subjt:  EILLGKTENFDELMAAAAEERGDTGDTDEQS

A0A6J1KJN4 uncharacterized protein At2g34160-like1.3e-5692.37Show/hide
Query:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+SMNLG D YKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERGDTGDTDEQS
        EI LGKTENFDELMAAAAEER +TGD DEQS
Subjt:  EILLGKTENFDELMAAAAEERGDTGDTDEQS

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341604.4e-4983.74Show/hide
Query:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEI +GVN+MNL  D  KKNRIQVSNTKKPLFFYVNLAKRYMQQ+N+VELSALGMAIATVVTV EILKNNG AVEKKI TSTVDIKDD+RGRPVQKAKI
Subjt:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERGD
        EI L K+E FDELMAAA EE+ D
Subjt:  EILLGKTENFDELMAAAAEERGD

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein4.1e-5080.92Show/hide
Query:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEI EGVN+MNL  D  KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIATVVTVAEILKNNG AVEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERGDTGDTDEQS
        EI L K+E FDELMAAA EE+ +  +  EQ+
Subjt:  EILLGKTENFDELMAAAAEERGDTGDTDEQS

AT2G34160.1 Alba DNA/RNA-binding protein3.1e-5083.74Show/hide
Query:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEI +GVN+MNL  D  KKNRIQVSNTKKPLFFYVNLAKRYMQQ+N+VELSALGMAIATVVTV EILKNNG AVEKKI TSTVDIKDD+RGRPVQKAKI
Subjt:  MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERGD
        EI L K+E FDELMAAA EE+ D
Subjt:  EILLGKTENFDELMAAAAEERGD

AT3G04620.1 Alba DNA/RNA-binding protein1.0e-3778.35Show/hide
Query:  YKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDELM
        +KKNRIQVSNTKKPLFFYVNLAKRY+QQHNEVELSALGMAI TVVT++EILKNNGLA EKK+ TSTV +KD+++G+ VQKAKIEI+LGK++ FD L+
Subjt:  YKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDELM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAATTGTGGAAGGTGTGAACTCCATGAATTTGGGTCCCGATGGGTATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCATTGTTCTTCTATGTCAA
TCTCGCTAAGAGGTACATGCAGCAGCATAATGAGGTCGAACTTTCTGCTCTTGGAATGGCAATTGCCACTGTTGTTACTGTTGCCGAAATTTTGAAAAACAATGGATTGG
CTGTTGAGAAGAAGATTGCAACTTCAACTGTTGATATCAAGGATGACTCAAGAGGTCGACCTGTCCAAAAGGCCAAGATTGAGATATTGCTGGGTAAAACCGAAAACTTT
GACGAATTGATGGCAGCTGCTGCTGAGGAAAGGGGGGACACAGGCGATACTGATGAGCAGAGT
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAATTGTGGAAGGTGTGAACTCCATGAATTTGGGTCCCGATGGGTATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCATTGTTCTTCTATGTCAA
TCTCGCTAAGAGGTACATGCAGCAGCATAATGAGGTCGAACTTTCTGCTCTTGGAATGGCAATTGCCACTGTTGTTACTGTTGCCGAAATTTTGAAAAACAATGGATTGG
CTGTTGAGAAGAAGATTGCAACTTCAACTGTTGATATCAAGGATGACTCAAGAGGTCGACCTGTCCAAAAGGCCAAGATTGAGATATTGCTGGGTAAAACCGAAAACTTT
GACGAATTGATGGCAGCTGCTGCTGAGGAAAGGGGGGACACAGGCGATACTGATGAGCAGAGT
Protein sequenceShow/hide protein sequence
MEEIVEGVNSMNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEILLGKTENF
DELMAAAAEERGDTGDTDEQS