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MS011772 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011772
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzinc finger Ran-binding domain-containing protein 2-like
Genome locationscaffold11:573443..574030
RNA-Seq ExpressionMS011772
SyntenyMS011772
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139322.1 zinc finger Ran-binding domain-containing protein 2 [Cucumis sativus]1.3e-5880.65Show/hide
Query:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQA---LLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTR
        SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY+ +   H ++   +LAGDWYCNCGAHNYASRS+CY+CNSNA+K++D IGALPGWKSGDWIC+R
Subjt:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQA---LLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTR

Query:  IGCEMHNYASRMECYKCNTPRDFG
        IGCE HNYASRMECYKC  PR FG
Subjt:  IGCEMHNYASRMECYKCNTPRDFG

XP_008457786.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo]6.7e-6082.26Show/hide
Query:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQA---LLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTR
        SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TY+ +   H ++   +LAGDWYCNCGAHNYASRS+CYRCNSNA+K++D IGALPGWKSGDWIC+R
Subjt:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQA---LLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTR

Query:  IGCEMHNYASRMECYKCNTPRDFG
        IGCE HNYASRMECYKC TPRDFG
Subjt:  IGCEMHNYASRMECYKCNTPRDFG

XP_022143171.1 uncharacterized RNA-binding protein C17H9.04c-like [Momordica charantia]5.8e-7299.17Show/hide
Query:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGC
        SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTD HQALLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGC
Subjt:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGC

Query:  EMHNYASRMECYKCNTPRDFG
        EMHNYASRMECYKCNTPRDFG
Subjt:  EMHNYASRMECYKCNTPRDFG

XP_022966014.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima]1.6e-5884.3Show/hide
Query:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGC
        SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYE++KT+    +LAGDWYC+CGAHNYASRS+CYRC  NA+K+ D IGALPGWKSGDWIC RIGC
Subjt:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGC

Query:  EMHNYASRMECYKCNTPRDFG
        E HNYASRMECYKC TPRDFG
Subjt:  EMHNYASRMECYKCNTPRDFG

XP_023538268.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. pepo]4.8e-5883.47Show/hide
Query:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGC
        SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYE++KT+    +LAGDWYC+CGAHNYASRS+CYRC  NA+K+ D IGALPGWKSGDWIC RIGC
Subjt:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGC

Query:  EMHNYASRMECYKCNTPRDFG
        E HNYASRMECYKC TPRDFG
Subjt:  EMHNYASRMECYKCNTPRDFG

TrEMBL top hitse value%identityAlignment
A0A0A0LIX1 Uncharacterized protein1.6e-5979.07Show/hide
Query:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQA---LLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTR
        SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY+ +   H ++   +LAGDWYCNCGAHNYASRS+CY+CNSNA+K++D IGALPGWKSGDWIC+R
Subjt:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQA---LLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTR

Query:  IGCEMHNYASRMECYKCNTPRDFGKKNYF
        IGCE HNYASRMECYKC  PR FGK   F
Subjt:  IGCEMHNYASRMECYKCNTPRDFGKKNYF

A0A1S3C6B6 uncharacterized RNA-binding protein C17H9.04c3.2e-6082.26Show/hide
Query:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQA---LLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTR
        SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TY+ +   H ++   +LAGDWYCNCGAHNYASRS+CYRCNSNA+K++D IGALPGWKSGDWIC+R
Subjt:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQA---LLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTR

Query:  IGCEMHNYASRMECYKCNTPRDFG
        IGCE HNYASRMECYKC TPRDFG
Subjt:  IGCEMHNYASRMECYKCNTPRDFG

A0A6J1CPG4 uncharacterized RNA-binding protein C17H9.04c-like2.8e-7299.17Show/hide
Query:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGC
        SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTD HQALLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGC
Subjt:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGC

Query:  EMHNYASRMECYKCNTPRDFG
        EMHNYASRMECYKCNTPRDFG
Subjt:  EMHNYASRMECYKCNTPRDFG

A0A6J1FCS1 zinc finger Ran-binding domain-containing protein 2-like9.7e-5781.82Show/hide
Query:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGC
        SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYE++KT+    +LAGDWYC+CGAHNYASRS+CYRC  NA+K+ D I ALPGWKSGDWIC RIGC
Subjt:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGC

Query:  EMHNYASRMECYKCNTPRDFG
        E HNYASRMECYKC TPR+FG
Subjt:  EMHNYASRMECYKCNTPRDFG

A0A6J1HSH3 zinc finger Ran-binding domain-containing protein 2-like7.9e-5984.3Show/hide
Query:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGC
        SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYE++KT+    +LAGDWYC+CGAHNYASRS+CYRC  NA+K+ D IGALPGWKSGDWIC RIGC
Subjt:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGC

Query:  EMHNYASRMECYKCNTPRDFG
        E HNYASRMECYKC TPRDFG
Subjt:  EMHNYASRMECYKCNTPRDFG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G17975.1 zinc finger (Ran-binding) family protein2.6e-1425.36Show/hide
Query:  GDWMCGVCEHVNFKKREACQRCGYPK--------------------YGGPDPTTYEY-----------HKTDHHQALLAGDWYCNCGAHNYASRSNCYRC
        GDW+C  C + N+  RE C++CG  K                    Y    P +++            ++   H+   +GDW C CG HNY+SR  C +C
Subjt:  GDWMCGVCEHVNFKKREACQRCGYPK--------------------YGGPDPTTYEY-----------HKTDHHQALLAGDWYCNCGAHNYASRSNCYRC

Query:  NSNA--------------------------------------------------------FKNVDNIGALPG-----WKSGDWICTRIGCEMHNYASRME
        N  A                                                        F    +  AL G     W+ GDW+CT   C+ HNYASR E
Subjt:  NSNA--------------------------------------------------------FKNVDNIGALPG-----WKSGDWICTRIGCEMHNYASRME

Query:  CYKCNTPRD
        C +C T RD
Subjt:  CYKCNTPRD

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein8.4e-4554.35Show/hide
Query:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYC---NCGAHNYASRSNCYRC--------------NSNAFKNVDNIG
        +GGDW+CG C+H NFKKRE+CQ+CGYPK+GG D +TY Y++T+    ++AGDWYC   NCG+HNYASR++CYRC                 A+ N D   
Subjt:  SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYC---NCGAHNYASRSNCYRC--------------NSNAFKNVDNIG

Query:  ALPGWKSGDWICTRIGCEMHNYASRMECYKCNTPRDFG
          PGWK+GDW+C R+GC +HNYASR EC+KC T RD+G
Subjt:  ALPGWKSGDWICTRIGCEMHNYASRMECYKCNTPRDFG

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein9.0e-3139.39Show/hide
Query:  GDWMCGVCEHVNFKKREACQRCG-------------YPKYGGPDPTTYEYHKTDHHQALLAGDWYC---NCGAHNYASRSNCYRCNSNAFKNVDNIGA--
        GDW C  C H+NF++R++CQRCG             +  +GG   + + +        +  GDWYC   NCG HN+ASRS C++C +  FK+    G   
Subjt:  GDWMCGVCEHVNFKKREACQRCG-------------YPKYGGPDPTTYEYHKTDHHQALLAGDWYC---NCGAHNYASRSNCYRCNSNAFKNVDNIGA--

Query:  -----------------LPG------WKSGDWICTRIGCEMHNYASRMECYKCNTPRDFGKKNYF
                         +PG      WKSGDWICTRIGC  HN+ASRMEC++CN PRDF  +  F
Subjt:  -----------------LPG------WKSGDWICTRIGCEMHNYASRMECYKCNTPRDFGKKNYF

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein5.1e-2634.97Show/hide
Query:  GDWMCGVCEHVNFKKREACQRCGYPKYGG------------PDPTTYEYHKTDHHQALLAGDWYCN---CGAHNYASRSNCYRCN-------------SN
        GDW C +C H+NF++R++CQRC  P+ GG            P  +++ ++       +  GDWYCN   CG HN+A+RS+C++C              + 
Subjt:  GDWMCGVCEHVNFKKREACQRCGYPKYGG------------PDPTTYEYHKTDHHQALLAGDWYCN---CGAHNYASRSNCYRCN-------------SN

Query:  AFKNVDNIGALPG------------------WKSGDWICTRIGCEMHNYASRMECYKCNTPRD
         F ++ N+G   G                  WKSGDWIC R GC  HN+ASR EC++CN P++
Subjt:  AFKNVDNIGALPG------------------WKSGDWICTRIGCEMHNYASRMECYKCNTPRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCGGGAGGCGACTGGATGTGCGGCGTGTGCGAGCACGTGAACTTCAAGAAGAGAGAAGCCTGCCAAAGATGTGGGTACCCAAAATATGGTGGCCCTGATCCCACAACATA
TGAATACCATAAAACAGATCATCATCAAGCTCTCTTGGCTGGAGATTGGTACTGCAACTGTGGAGCTCACAACTATGCCAGCAGATCAAACTGCTACAGATGCAATAGTA
ATGCGTTTAAGAATGTGGATAATATTGGTGCCTTGCCTGGATGGAAATCTGGGGATTGGATTTGCACTAGAATAGGATGCGAAATGCACAATTATGCGAGTAGGATGGAA
TGCTACAAATGCAACACTCCGAGGGATTTTGGTAAGAAGAATTATTTT
mRNA sequenceShow/hide mRNA sequence
TCGGGAGGCGACTGGATGTGCGGCGTGTGCGAGCACGTGAACTTCAAGAAGAGAGAAGCCTGCCAAAGATGTGGGTACCCAAAATATGGTGGCCCTGATCCCACAACATA
TGAATACCATAAAACAGATCATCATCAAGCTCTCTTGGCTGGAGATTGGTACTGCAACTGTGGAGCTCACAACTATGCCAGCAGATCAAACTGCTACAGATGCAATAGTA
ATGCGTTTAAGAATGTGGATAATATTGGTGCCTTGCCTGGATGGAAATCTGGGGATTGGATTTGCACTAGAATAGGATGCGAAATGCACAATTATGCGAGTAGGATGGAA
TGCTACAAATGCAACACTCCGAGGGATTTTGGTAAGAAGAATTATTTT
Protein sequenceShow/hide protein sequence
SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGCEMHNYASRME
CYKCNTPRDFGKKNYF