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MS011804 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011804
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionarabinogalactan protein 22
Genome locationscaffold11:848619..848922
RNA-Seq ExpressionMS011804
SyntenyMS011804
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061559.1 putative Arabinogalactan protein 22 [Cucumis melo var. makuwa]8.9e-1678.46Show/hide
Query:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        MSS+KL AVP  G L FL +LQLA+GHSHDISPA  GPSNDGAAIDQGIAYVLLL+ALA+TYI+H
Subjt:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

KAF8034376.1 hypothetical protein BT93_C0621 [Corymbia citriodora subsp. variegata]1.7e-1164.62Show/hide
Query:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        M++M+   VP+    MFLTLLQL+YG S   SPAP GPSNDG AIDQGIAYVLL  ALA+TY+ H
Subjt:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

KAF9662510.1 hypothetical protein SADUNF_Sadunf18G0060600 [Salix dunnii]1.0e-1161.54Show/hide
Query:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        M+SM+L+A+PI G  MFL LL+  +G     SPAP GPSNDG  IDQGIAYVLL++ALA+TY++H
Subjt:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

KGN60622.1 hypothetical protein Csa_019490 [Cucumis sativus]6.1e-1784.62Show/hide
Query:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        MSS+KL AVPI G L FL +LQLA+GHSHDISPA AGPSNDGAAIDQGIAYVLLL+ALAVTYIVH
Subjt:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

OAY53733.1 hypothetical protein MANES_03G019400v8 [Manihot esculenta]1.6e-1266.15Show/hide
Query:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        MS MKLF +PI G L+FL L+QL+YG     SPAP GPS+DG AIDQGIA++L+LVALAVTY++H
Subjt:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

TrEMBL top hitse value%identityAlignment
A0A059CP27 Uncharacterized protein1.1e-1164.62Show/hide
Query:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        M++++   +P+    MFLTLLQL YG S   SPAP GPSNDG AIDQGIAY LLLVALAVTY+ H
Subjt:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

A0A0A0LIU0 Uncharacterized protein3.0e-1784.62Show/hide
Query:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        MSS+KL AVPI G L FL +LQLA+GHSHDISPA AGPSNDGAAIDQGIAYVLLL+ALAVTYIVH
Subjt:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

A0A2C9UBX1 Uncharacterized protein5.4e-1161.54Show/hide
Query:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        MS MKL+A   AG ++F  LLQL YG     SPAP GP++DG +IDQGIAY+LLLVALA+TY+ H
Subjt:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

A0A2C9W3S5 Uncharacterized protein7.6e-1366.15Show/hide
Query:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        MS MKLF +PI G L+FL L+QL+YG     SPAP GPS+DG AIDQGIA++L+LVALAVTY++H
Subjt:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

A0A5A7V7C0 Putative Arabinogalactan protein 224.3e-1678.46Show/hide
Query:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        MSS+KL AVP  G L FL +LQLA+GHSHDISPA  GPSNDGAAIDQGIAYVLLL+ALA+TYI+H
Subjt:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 161.9e-0546.15Show/hide
Query:  LLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        L  F+  + L+   +  ++PAPA P++DG +IDQGIAY+L++VAL +TY++H
Subjt:  LLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

Q8L9T8 Arabinogalactan protein 417.8e-0750Show/hide
Query:  MSSMKL-FAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        MS  +L F V     ++F  LL +A  H+   +PAPA P++DG  IDQGIAYVL+LVAL +TY++H
Subjt:  MSSMKL-FAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

Q9FK16 Arabinogalactan protein 228.3e-0949.23Show/hide
Query:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        M+S+K F + I  + + ++++ L    SH  SPAPA P++DG +IDQGIAYVL++VALA+TY +H
Subjt:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

Q9M373 Arabinogalactan protein 201.9e-0539.66Show/hide
Query:  AVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        +V +  L  F+  +   +  +  ++PAP+ P++DG +IDQGIAY+L++VAL +TY++H
Subjt:  AVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 161.4e-0646.15Show/hide
Query:  LLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        L  F+  + L+   +  ++PAPA P++DG +IDQGIAY+L++VAL +TY++H
Subjt:  LLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

AT3G61640.1 arabinogalactan protein 201.4e-0639.66Show/hide
Query:  AVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        +V +  L  F+  +   +  +  ++PAP+ P++DG +IDQGIAY+L++VAL +TY++H
Subjt:  AVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

AT5G24105.1 arabinogalactan protein 415.5e-0850Show/hide
Query:  MSSMKL-FAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        MS  +L F V     ++F  LL +A  H+   +PAPA P++DG  IDQGIAYVL+LVAL +TY++H
Subjt:  MSSMKL-FAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

AT5G53250.1 arabinogalactan protein 225.9e-1049.23Show/hide
Query:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        M+S+K F + I  + + ++++ L    SH  SPAPA P++DG +IDQGIAYVL++VALA+TY +H
Subjt:  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCGATGAAGCTATTCGCCGTTCCGATCGCCGGATTACTCATGTTCTTGACTCTTCTGCAACTAGCCTACGGGCACTCGCACGATATTTCGCCGGCGCCGGCGGG
TCCTTCGAACGACGGCGCTGCAATTGACCAAGGGATTGCTTACGTTCTTCTTCTGGTGGCCCTCGCCGTTACTTACATCGTCCAT
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCGATGAAGCTATTCGCCGTTCCGATCGCCGGATTACTCATGTTCTTGACTCTTCTGCAACTAGCCTACGGGCACTCGCACGATATTTCGCCGGCGCCGGCGGG
TCCTTCGAACGACGGCGCTGCAATTGACCAAGGGATTGCTTACGTTCTTCTTCTGGTGGCCCTCGCCGTTACTTACATCGTCCAT
Protein sequenceShow/hide protein sequence
MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH