CuGenDBv2

Gene ID	MS011863
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	sister-chromatid cohesion protein 3 isoform X2
Genome location	scaffold1150:73552..76781
RNA-Seq Expression	MS011863
Synteny	MS011863
Gene Ontology terms	GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588517.1 Sister-chromatid cohesion protein 3, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-48

85.71

Show/hide

Query:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE
        IKDVQ RTENINTDEDPSGWRPYH FVD LREK AK DGLQEEKEG +TRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQE+VHD EEK DEED+E
Subjt:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE

Query:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRAT
        EAPLI SIRSSSKLRSL ISRDE     TG+AT
Subjt:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRAT

KAG7022376.1 Sister-chromatid cohesion protein 3 [Cucurbita argyrosperma subsp. argyrosperma]

1.3e-48

85.71

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Query:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE
        IKDVQ RTENINTDEDPSGWRPYH FVD LREK AK DGLQEEKEG +TRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQE+VHD EEK DEED+E
Subjt:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE

Query:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRAT
        EAPLI SIRSSSKLRSL ISRDE     TG+AT
Subjt:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRAT

XP_022155695.1 sister-chromatid cohesion protein 3 isoform X1 [Momordica charantia]

1.3e-64

99.28

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Query:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE
        IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHD+EEKPDEEDEE
Subjt:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE

Query:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRATDGMSA
        EAPLIQSIRSSSKLRSLIISRDESTTHTTGRATDGMSA
Subjt:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRATDGMSA

XP_022155696.1 sister-chromatid cohesion protein 3 isoform X2 [Momordica charantia]

9.4e-63

98.55

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Query:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE
        IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQ EKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHD+EEKPDEEDEE
Subjt:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE

Query:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRATDGMSA
        EAPLIQSIRSSSKLRSLIISRDESTTHTTGRATDGMSA
Subjt:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRATDGMSA

XP_022931702.1 sister-chromatid cohesion protein 3 isoform X2 [Cucurbita moschata]

1.3e-48

85.71

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Query:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE
        IKDVQ RTENINTDEDPSGWRPYH FVD LREK AK DGLQEEKEG +TRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQE+VHD EEK DEED+E
Subjt:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE

Query:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRAT
        EAPLI SIRSSSKLRSL ISRDE     TG+AT
Subjt:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRAT

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DN49 sister-chromatid cohesion protein 3 isoform X1

6.4e-65

99.28

Show/hide

Query:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE
        IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHD+EEKPDEEDEE
Subjt:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE

Query:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRATDGMSA
        EAPLIQSIRSSSKLRSLIISRDESTTHTTGRATDGMSA
Subjt:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRATDGMSA

A0A6J1DSG6 sister-chromatid cohesion protein 3 isoform X2

4.6e-63

98.55

Show/hide

Query:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE
        IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQ EKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHD+EEKPDEEDEE
Subjt:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE

Query:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRATDGMSA
        EAPLIQSIRSSSKLRSLIISRDESTTHTTGRATDGMSA
Subjt:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRATDGMSA

A0A6J1EUF3 sister-chromatid cohesion protein 3 isoform X2

6.4e-49

85.71

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Query:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE
        IKDVQ RTENINTDEDPSGWRPYH FVD LREK AK DGLQEEKEG +TRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQE+VHD EEK DEED+E
Subjt:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE

Query:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRAT
        EAPLI SIRSSSKLRSL ISRDE     TG+AT
Subjt:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRAT

A0A6J1F078 sister-chromatid cohesion protein 3 isoform X1

6.4e-49

85.71

Show/hide

Query:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE
        IKDVQ RTENINTDEDPSGWRPYH FVD LREK AK DGLQEEKEG +TRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQE+VHD EEK DEED+E
Subjt:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE

Query:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRAT
        EAPLI SIRSSSKLRSL ISRDE     TG+AT
Subjt:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRAT

A0A6J1HZD0 sister-chromatid cohesion protein 3 isoform X1

8.3e-49

84.96

Show/hide

Query:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE
        IKDVQ RTEN+NTDEDPSGWRPYH FVD LREK AK DGLQEEKEG +TRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQE+VHD EEK DEED+E
Subjt:  IKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEE

Query:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRAT
        EAPLI SIRSSSKLRSL ISRDE     TG+AT
Subjt:  EAPLIQSIRSSSKLRSLIISRDESTTHTTGRAT

SwissProt top hits

e value

%identity

Alignment

O82265 Sister-chromatid cohesion protein 3

5.4e-21

52.59

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Query:  KDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEEE
        KDVQ R  ++NTDEDPSGWRP  TF++ L EK  K++ LQ++KE    RRRGRPRK+   + KRLFDEQS S+E+ESIS        D E+K D    E+
Subjt:  KDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEEE

Query:  APLIQSIRSSSKLRSL
        APLI++IRS+++ ++L
Subjt:  APLIQSIRSSSKLRSL

Arabidopsis top hits

e value

%identity

Alignment

AT2G47980.1 sister-chromatid cohesion protein 3

3.9e-22

52.59

Show/hide

Query:  KDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEEE
        KDVQ R  ++NTDEDPSGWRP  TF++ L EK  K++ LQ++KE    RRRGRPRK+   + KRLFDEQS S+E+ESIS        D E+K D    E+
Subjt:  KDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEEE

Query:  APLIQSIRSSSKLRSL
        APLI++IRS+++ ++L
Subjt:  APLIQSIRSSSKLRSL

Sequences

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CDS sequence

Show/hide CDS sequence

TCACATAGTATCAAGGATGTCCAGAAGCGAACAGAAAATATAAATACAGATGAAGACCCAAGTGGCTGGCGCCCCTATCATACATTTGTTGACAGATTGCGTGAAAAGTA
TGCTAAAAGTGATGGTCTTCAAGAAGAGAAAGAAGGAAAAACTACCAGACGCAGGGGTCGGCCACGGAAAAAACATACTATACAGGGAAAGAGACTTTTTGATGAGCAAA
GTACAAGTGAAGAAGAGGAATCAATTAGTGCATCTGACCAAGAAAATGTACATGATGAAGAAGAGAAGCCGGATGAGGAAGATGAGGAAGAAGCACCACTCATCCAATCA
ATTAGGTCATCCTCCAAGTTGAGGTCACTGATAATTTCAAGAGATGAAAGCACCACTCATACAACGGGCAGAGCTACAGATGGCATGTCTGCT

mRNA sequence

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Protein sequence

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SHSIKDVQKRTENINTDEDPSGWRPYHTFVDRLREKYAKSDGLQEEKEGKTTRRRGRPRKKHTIQGKRLFDEQSTSEEEESISASDQENVHDEEEKPDEEDEEEAPLIQS
IRSSSKLRSLIISRDESTTHTTGRATDGMSA

MS011863 (gene) of Bitter gourd (TR) v1 genome