; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS011871 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011871
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionexosome complex component RRP4 homolog
Genome locationscaffold1150:135640..138709
RNA-Seq ExpressionMS011871
SyntenyMS011871
Gene Ontology termsGO:0000178 - exosome (RNase complex) (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR004088 - K Homology domain, type 1
IPR012340 - Nucleic acid-binding, OB-fold
IPR026699 - Exosome complex RNA-binding protein 1/RRP40/RRP4
IPR036612 - K Homology domain, type 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606437.1 Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma subsp. sororia]2.3e-16088.45Show/hide
Query:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV
        MRGLQ+SLNQTQKIRLQ ALE+LESIS KANSDASV+VADTIP+NYEDG+LKGHGT DL+GEVVAT+CGVVERVNKLIYVRALRAR YKPEVGDI+VGRV
Subjt:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV

Query:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
         EVAPKRWRLDINYSQ AVLMLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
Subjt:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL

Query:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
        EQYGIDLILGCNGFIWIGEHVDP EDMM+ED +NK EQKG K EG+FGN + QER+YTPLETR+NICR ANA+RVLS LGFI++VEVIMETV+LS+SLNI
Subjt:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI

Query:  DVHEMLGSEFCVLVAENEVERRTSSKKRG
        DVHEMLGSEFCVL AE E ERRTSSKKRG
Subjt:  DVHEMLGSEFCVLVAENEVERRTSSKKRG

XP_022155677.1 exosome complex component RRP4 homolog isoform X1 [Momordica charantia]6.4e-17999.7Show/hide
Query:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV
        MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRAR YKPEVGDIVVGRV
Subjt:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV

Query:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
        MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
Subjt:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL

Query:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
        EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
Subjt:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI

Query:  DVHEMLGSEFCVLVAENEVERRTSSKKRG
        DVHEMLGSEFCVLVAENEVERRTSSKKRG
Subjt:  DVHEMLGSEFCVLVAENEVERRTSSKKRG

XP_022155678.1 exosome complex component RRP4 homolog isoform X2 [Momordica charantia]6.4e-17999.7Show/hide
Query:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV
        MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRAR YKPEVGDIVVGRV
Subjt:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV

Query:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
        MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
Subjt:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL

Query:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
        EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
Subjt:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI

Query:  DVHEMLGSEFCVLVAENEVERRTSSKKRG
        DVHEMLGSEFCVLVAENEVERRTSSKKRG
Subjt:  DVHEMLGSEFCVLVAENEVERRTSSKKRG

XP_022995373.1 exosome complex component RRP4 homolog [Cucurbita maxima]1.7e-16088.45Show/hide
Query:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV
        MRGLQ+SLNQTQKIRLQ ALE+LESIS KANSDASV+VADTIP+NYEDG+LKGHGT DL+GEVVAT+CGVVERVNKLIYVRALRAR YKPEVGDI+VGRV
Subjt:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV

Query:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
         EVAPKRWRLDINYSQ AVLMLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
Subjt:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL

Query:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
        EQYGIDLILGCNGFIWIGEHVDP EDMM+ED +NK EQKG K EG+FGN + QER+YTPLETR+NICR ANA+RVLS LGFI++VEVIMETV+LS+SLNI
Subjt:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI

Query:  DVHEMLGSEFCVLVAENEVERRTSSKKRG
        DVHEMLGSEFCVL AE E ERRTSSKKRG
Subjt:  DVHEMLGSEFCVLVAENEVERRTSSKKRG

XP_023533481.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo]1.7e-16088.45Show/hide
Query:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV
        MRGLQ+SLNQTQKIRLQ ALE+LESIS KANSDASV+VADTIP+NYEDG+LKGHGT DL+GEVVAT+CGVVERVNKLIYVRALRAR YKPEVGDI+VGRV
Subjt:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV

Query:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
         EVAPKRWRLDINYSQ AVLMLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
Subjt:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL

Query:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
        EQYGIDLILGCNGFIWIGEHVDP EDMM+ED +NK EQKG K EGNFGN + QER+YTPLETR+NICR ANA+RVLS LGFI++VEVIMETV+L +SLNI
Subjt:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI

Query:  DVHEMLGSEFCVLVAENEVERRTSSKKRG
        DVHEMLGSEFCVL AE E ERRTSSKKRG
Subjt:  DVHEMLGSEFCVLVAENEVERRTSSKKRG

TrEMBL top hitse value%identityAlignment
A0A6J1DNK7 exosome complex component RRP4 homolog isoform X23.1e-17999.7Show/hide
Query:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV
        MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRAR YKPEVGDIVVGRV
Subjt:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV

Query:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
        MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
Subjt:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL

Query:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
        EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
Subjt:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI

Query:  DVHEMLGSEFCVLVAENEVERRTSSKKRG
        DVHEMLGSEFCVLVAENEVERRTSSKKRG
Subjt:  DVHEMLGSEFCVLVAENEVERRTSSKKRG

A0A6J1DQ00 exosome complex component RRP4 homolog isoform X13.1e-17999.7Show/hide
Query:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV
        MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRAR YKPEVGDIVVGRV
Subjt:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV

Query:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
        MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
Subjt:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL

Query:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
        EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
Subjt:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI

Query:  DVHEMLGSEFCVLVAENEVERRTSSKKRG
        DVHEMLGSEFCVLVAENEVERRTSSKKRG
Subjt:  DVHEMLGSEFCVLVAENEVERRTSSKKRG

A0A6J1EXY1 exosome complex component RRP4 homolog2.1e-15988.38Show/hide
Query:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV
        MRGLQ+SLNQTQKIRLQ ALE+LESIS KANSDASV+VADTIP+NYEDG+LKGHGT DL+GEVVAT+CGVVERVNKLIYVRALRAR YKPEVGDI+VGRV
Subjt:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV

Query:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
         EVAPKRWRLDINYSQ AVLMLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
Subjt:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL

Query:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
        EQYGIDLILGCNGFIWIGEHVDP EDMM+ED +NK EQKG K EG+FGN + QER+YTPLETR+NICR ANA+RVLS LGFI++VEVIMETV+LS+SLNI
Subjt:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI

Query:  DVHEMLGSEFCVLVAENEVERRTSSKK
        DVHEMLGSEFCVL AE E ERRTSSKK
Subjt:  DVHEMLGSEFCVLVAENEVERRTSSKK

A0A6J1HGD9 exosome complex component RRP4 homolog isoform X12.7e-15989.36Show/hide
Query:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV
        MR LQISLNQTQKIRLQ ALE LESIS KANSDASVIVADTIP+NY+DG+LKGHGT DL+GEVVAT+CGVVERVNKLIYVRALRAR YKPEVGDI+VGRV
Subjt:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV

Query:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
         EVAPKRWRL+INYSQ AVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
Subjt:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL

Query:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
        EQYGIDLI GCNGFIWIGEHVDP EDMMIEDQVNK EQKG K EG FGN + QERVYTPLETR+NICR ANA+RVLS LGFI+TVEVIMETV+LS SLNI
Subjt:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI

Query:  DVHEMLGSEFCVLVAENEVERRTSSKKRG
        +VHEMLGSEFCVL AE E ERRTSSKKRG
Subjt:  DVHEMLGSEFCVLVAENEVERRTSSKKRG

A0A6J1K7S0 exosome complex component RRP4 homolog8.5e-16188.45Show/hide
Query:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV
        MRGLQ+SLNQTQKIRLQ ALE+LESIS KANSDASV+VADTIP+NYEDG+LKGHGT DL+GEVVAT+CGVVERVNKLIYVRALRAR YKPEVGDI+VGRV
Subjt:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV

Query:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
         EVAPKRWRLDINYSQ AVLMLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL
Subjt:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHL

Query:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
        EQYGIDLILGCNGFIWIGEHVDP EDMM+ED +NK EQKG K EG+FGN + QER+YTPLETR+NICR ANA+RVLS LGFI++VEVIMETV+LS+SLNI
Subjt:  EQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI

Query:  DVHEMLGSEFCVLVAENEVERRTSSKKRG
        DVHEMLGSEFCVL AE E ERRTSSKKRG
Subjt:  DVHEMLGSEFCVLVAENEVERRTSSKKRG

SwissProt top hitse value%identityAlignment
Q09704 Exosome complex component rrp41.4e-4341.47Show/hide
Query:  LKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEEN
        ++GHGT+   G + A+V G V+RVNKLI V+ LR++ Y PE+GD+++G++ EV PKRW++DI   Q AVLMLSS+NLP GIQRR+   DEL MRS F+E 
Subjt:  LKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEEN

Query:  DVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGN
        D++ AEV+ +  DG + +  RS KYGKL  G  L V P LV R K H + L   G+D+IL  NG++W+ +H    E+      + + E++   SE  + N
Subjt:  DVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGN

Query:  LEEQERVYTPLE-TRRNICRAANAVRVL-----STLGFIVTVEVIMETVNLSLSLNID
          ++   YT L  +R +IC    A R L     S   F  +  V     +L++  N+D
Subjt:  LEEQERVYTPLE-TRRNICRAANAVRVL-----STLGFIVTVEVIMETVNLSLSLNID

Q13868 Exosome complex component RRP42.6e-4254.1Show/hide
Query:  VIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRR
        V+  DTI    + G ++GHGT+    +++A+V G VERVNKLI V+AL+ R Y  EVGDIVVGR+ EV  KRW+++ N    +VL+LSSMNLP G  RRR
Subjt:  VIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRR

Query:  TAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWI
        +A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR+K HFH L   G  +ILG NGFIWI
Subjt:  TAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWI

Q2KID0 Exosome complex component RRP41.5e-4248.37Show/hide
Query:  KIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDI
        ++RL  A + L     + +    V+  DTI    + G ++GHGT+    +++A+V G VERVNKLI V+AL+ R Y  EVGDIVVGR+ EV  KRW+++ 
Subjt:  KIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDI

Query:  NYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGC
        N    +VL+LSSMNLP G  RRR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR+K HFH L   G  +ILG 
Subjt:  NYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGC

Query:  NGFIWIGEHVDPAED
        NGFIW+    +  ED
Subjt:  NGFIWIGEHVDPAED

Q8VBV3 Exosome complex component RRP41.7e-4142.21Show/hide
Query:  KIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDI
        ++RL  A + L     + +    V+  DTI    + G ++GHGT+    +++A+V G VERVNKLI V+AL+ R Y  EVGDIVVGR+ EV  KRW+++ 
Subjt:  KIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDI

Query:  NYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGC
        N    +VL+LSSMNLP G  RRR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR+K HFH L   G  +ILG 
Subjt:  NYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGC

Query:  NGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
        NGFIWI  +  P             E K   + G   NLE        L  R  I R  N V +L T   ++    I+     SL+  I
Subjt:  NGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI

Q9ZVT7 Exosome complex component RRP4 homolog2.6e-11967.17Show/hide
Query:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV
        MR LQ+ L+QTQK+R + A+E L+S+S  ANSDASVIV D+IPVN++D  LKGHGT ++ GE++ATVCGVVERV+KL+YVR LRAR YKPEVGDIVVGRV
Subjt:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV

Query:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHH
        +EVA KRWR+++N++Q  VLMLSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR FQHDG L LQARSQKYGKLE+GQLL V PYLVKR K HFH+
Subjt:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHH

Query:  LEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLN
        +E  GIDLI+GCNGFIW+GEHV+  + M I+DQ ++ E     S G       +E+ + PLETR+ ICR  NA+RVLS LGF VT+EVIMETVNLS S N
Subjt:  LEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLN

Query:  IDVHEMLGSEFCVLVAENEVERRTSSKKR
        ID+H+MLGSEF V+VAENE ERR + +K+
Subjt:  IDVHEMLGSEFCVLVAENEVERRTSSKKR

Arabidopsis top hitse value%identityAlignment
AT1G03360.1 ribosomal RNA processing 41.9e-12067.17Show/hide
Query:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV
        MR LQ+ L+QTQK+R + A+E L+S+S  ANSDASVIV D+IPVN++D  LKGHGT ++ GE++ATVCGVVERV+KL+YVR LRAR YKPEVGDIVVGRV
Subjt:  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRV

Query:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHH
        +EVA KRWR+++N++Q  VLMLSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR FQHDG L LQARSQKYGKLE+GQLL V PYLVKR K HFH+
Subjt:  MEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHH

Query:  LEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLN
        +E  GIDLI+GCNGFIW+GEHV+  + M I+DQ ++ E     S G       +E+ + PLETR+ ICR  NA+RVLS LGF VT+EVIMETVNLS S N
Subjt:  LEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLN

Query:  IDVHEMLGSEFCVLVAENEVERRTSSKKR
        ID+H+MLGSEF V+VAENE ERR + +K+
Subjt:  IDVHEMLGSEFCVLVAENEVERRTSSKKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGATTACAGATTTCTTTGAATCAAACTCAGAAAATTCGGCTCCAGAGTGCCTTAGAATCACTTGAGTCGATCTCTTTGAAGGCCAATTCTGATGCTTCTGTTAT
AGTTGCTGATACTATCCCTGTCAATTATGAGGATGGCATCCTCAAGGGACACGGGACTTTTGACCTGCATGGTGAAGTGGTTGCCACTGTTTGTGGAGTGGTTGAGCGAG
TCAATAAGCTCATCTATGTACGTGCATTACGTGCCAGGTTATATAAACCAGAGGTTGGTGATATTGTGGTAGGGCGTGTTATGGAGGTTGCTCCAAAACGTTGGAGATTG
GATATAAATTATAGTCAAGCTGCAGTTTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGAGGCGGCGAACTGCAGTAGATGAACTCAACATGCGGAGTATTTT
TGAAGAAAATGATGTTATTTGTGCAGAAGTTCGTGGTTTTCAGCATGATGGTCTACACCTTCAAGCAAGAAGCCAGAAATATGGAAAGCTTGAGAGAGGCCAGCTGCTCA
CAGTATCACCATATCTAGTGAAGAGACGCAAGCAACACTTCCATCATTTAGAGCAGTACGGAATTGACTTAATACTTGGATGCAATGGGTTTATCTGGATTGGGGAGCAT
GTTGATCCCGCCGAGGATATGATGATAGAAGATCAAGTTAATAAATTTGAACAAAAGGGTCCAAAGTCAGAAGGAAATTTTGGTAACCTTGAAGAGCAGGAAAGAGTATA
TACCCCATTAGAGACACGGCGGAATATATGCAGGGCTGCAAATGCCGTTCGGGTACTGTCTACCTTAGGTTTCATAGTTACAGTAGAAGTTATTATGGAGACAGTTAATT
TAAGTCTTTCTCTGAACATCGATGTGCATGAAATGCTTGGTTCAGAGTTCTGCGTTCTCGTTGCAGAAAATGAGGTTGAACGGAGGACCTCAAGTAAGAAGAGGGGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGATTACAGATTTCTTTGAATCAAACTCAGAAAATTCGGCTCCAGAGTGCCTTAGAATCACTTGAGTCGATCTCTTTGAAGGCCAATTCTGATGCTTCTGTTAT
AGTTGCTGATACTATCCCTGTCAATTATGAGGATGGCATCCTCAAGGGACACGGGACTTTTGACCTGCATGGTGAAGTGGTTGCCACTGTTTGTGGAGTGGTTGAGCGAG
TCAATAAGCTCATCTATGTACGTGCATTACGTGCCAGGTTATATAAACCAGAGGTTGGTGATATTGTGGTAGGGCGTGTTATGGAGGTTGCTCCAAAACGTTGGAGATTG
GATATAAATTATAGTCAAGCTGCAGTTTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGAGGCGGCGAACTGCAGTAGATGAACTCAACATGCGGAGTATTTT
TGAAGAAAATGATGTTATTTGTGCAGAAGTTCGTGGTTTTCAGCATGATGGTCTACACCTTCAAGCAAGAAGCCAGAAATATGGAAAGCTTGAGAGAGGCCAGCTGCTCA
CAGTATCACCATATCTAGTGAAGAGACGCAAGCAACACTTCCATCATTTAGAGCAGTACGGAATTGACTTAATACTTGGATGCAATGGGTTTATCTGGATTGGGGAGCAT
GTTGATCCCGCCGAGGATATGATGATAGAAGATCAAGTTAATAAATTTGAACAAAAGGGTCCAAAGTCAGAAGGAAATTTTGGTAACCTTGAAGAGCAGGAAAGAGTATA
TACCCCATTAGAGACACGGCGGAATATATGCAGGGCTGCAAATGCCGTTCGGGTACTGTCTACCTTAGGTTTCATAGTTACAGTAGAAGTTATTATGGAGACAGTTAATT
TAAGTCTTTCTCTGAACATCGATGTGCATGAAATGCTTGGTTCAGAGTTCTGCGTTCTCGTTGCAGAAAATGAGGTTGAACGGAGGACCTCAAGTAAGAAGAGGGGA
Protein sequenceShow/hide protein sequence
MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRL
DINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEH
VDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNIDVHEMLGSEFCVLVAENEVERRTSSKKRG