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MS011872 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011872
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Genome locationscaffold1150:140780..141199
RNA-Seq ExpressionMS011872
SyntenyMS011872
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057288.1 hypothetical protein E6C27_scaffold280G001290 [Cucumis melo var. makuwa]4.1e-1043.15Show/hide
Query:  MGRNSKSPKRN-PVCEKLRKILG--GYPNLIKFRPLSNRQPEDNKVLGVAPEEGKVGDGDGDRGVGVGVGGEGKKSG--EKDVNDVFSDYISRAKRRLGS
        MGRN KS   N P CEKL K  G    P + K  P ++   + ++    + +   V        +        K  G  E  VNDVFS+YI+RAKRRLG+
Subjt:  MGRNSKSPKRN-PVCEKLRKILG--GYPNLIKFRPLSNRQPEDNKVLGVAPEEGKVGDGDGDRGVGVGVGGEGKKSG--EKDVNDVFSDYISRAKRRLGS

Query:  ISIKRH---DSGYKGKDNNAK-DDRRFSDYISRARANNNLRATSST
        I+ K+H   DS  KGK+N+ K +DRRFSDYI+RAR  + LRATSS+
Subjt:  ISIKRH---DSGYKGKDNNAK-DDRRFSDYISRARANNNLRATSST

KAG6571440.1 hypothetical protein SDJN03_28168, partial [Cucurbita argyrosperma subsp. sororia]4.3e-1547.45Show/hide
Query:  MGRNSKSPKRNPVCEKLRKILGGYPNLIKFRPLSNRQPEDNKVLGVAPEEGKVGDGDGDRGVGVGVGGEGKKSGEKDVNDVFSDYISRAKRRLGSISIKR
        MG+N+KS KR+ VCE+  K LG  P+     P  + +P       +APE       D  + + +    + +K  + + ND FSDYI+RAKRRLGSIS KR
Subjt:  MGRNSKSPKRNPVCEKLRKILGGYPNLIKFRPLSNRQPEDNKVLGVAPEEGKVGDGDGDRGVGVGVGGEGKKSGEKDVNDVFSDYISRAKRRLGSISIKR

Query:  HDSGYKGKDNNAKDDRRFSDYISRARANNNLRATSST
        HD   KGK+ N K+DRRF+DYI RAR  N LRATSST
Subjt:  HDSGYKGKDNNAKDDRRFSDYISRARANNNLRATSST

KAG6606435.1 hypothetical protein SDJN03_03752, partial [Cucurbita argyrosperma subsp. sororia]4.2e-2354.01Show/hide
Query:  MGRNSKSPKRNPVCEKLRKILGGYPNLIKFRPLSNRQPEDNKVLGVAPEEGKVGDGDGDRGVGVGVGGEGKKSGEKDVNDVFSDYISRAKRRLGSISIKR
        MGRNSKS KRNPVCEKL K LG YP ++KF P  NRQ E            ++ D + ++          ++   +DVNDVFSDYISRAKRRLGSIS KR
Subjt:  MGRNSKSPKRNPVCEKLRKILGGYPNLIKFRPLSNRQPEDNKVLGVAPEEGKVGDGDGDRGVGVGVGGEGKKSGEKDVNDVFSDYISRAKRRLGSISIKR

Query:  HDSGYKGKDNNAKDDRRFSDYISRARANNNLRATSST
        HD   +GK+ N K+D RFSDYI RAR  N L+ATSS+
Subjt:  HDSGYKGKDNNAKDDRRFSDYISRARANNNLRATSST

KGN47879.1 hypothetical protein Csa_004306 [Cucumis sativus]3.6e-0640.4Show/hide
Query:  MGRNSKSPKRN-PVCEKLRKILGGYPNLIKFRPLS----------NRQPEDNKVLGVAPEEGKVGDGDGDRGVGVGVGGEGKKSGEKDVNDVFSDYISRA
        MG+NSKS   N P CEKL K   G  +  K   LS          ++Q  ++        E  V +           GG+     E  VN  FS+YI+RA
Subjt:  MGRNSKSPKRN-PVCEKLRKILGGYPNLIKFRPLS----------NRQPEDNKVLGVAPEEGKVGDGDGDRGVGVGVGGEGKKSGEKDVNDVFSDYISRA

Query:  KRRLGSISIKRH--DSGYKGKDNNAK-DDRRFSDYISRARANNNLRATSST
        KRRL +++ K+H  DS  +GK+NN K +DRRFSDYI RAR  N LR+TSS+
Subjt:  KRRLGSISIKRH--DSGYKGKDNNAK-DDRRFSDYISRARANNNLRATSST

TrEMBL top hitse value%identityAlignment
A0A0A0KG94 Uncharacterized protein1.7e-0640.4Show/hide
Query:  MGRNSKSPKRN-PVCEKLRKILGGYPNLIKFRPLS----------NRQPEDNKVLGVAPEEGKVGDGDGDRGVGVGVGGEGKKSGEKDVNDVFSDYISRA
        MG+NSKS   N P CEKL K   G  +  K   LS          ++Q  ++        E  V +           GG+     E  VN  FS+YI+RA
Subjt:  MGRNSKSPKRN-PVCEKLRKILGGYPNLIKFRPLS----------NRQPEDNKVLGVAPEEGKVGDGDGDRGVGVGVGGEGKKSGEKDVNDVFSDYISRA

Query:  KRRLGSISIKRH--DSGYKGKDNNAK-DDRRFSDYISRARANNNLRATSST
        KRRL +++ K+H  DS  +GK+NN K +DRRFSDYI RAR  N LR+TSS+
Subjt:  KRRLGSISIKRH--DSGYKGKDNNAK-DDRRFSDYISRARANNNLRATSST

A0A5D3CQZ7 Uncharacterized protein2.0e-1043.15Show/hide
Query:  MGRNSKSPKRN-PVCEKLRKILG--GYPNLIKFRPLSNRQPEDNKVLGVAPEEGKVGDGDGDRGVGVGVGGEGKKSG--EKDVNDVFSDYISRAKRRLGS
        MGRN KS   N P CEKL K  G    P + K  P ++   + ++    + +   V        +        K  G  E  VNDVFS+YI+RAKRRLG+
Subjt:  MGRNSKSPKRN-PVCEKLRKILG--GYPNLIKFRPLSNRQPEDNKVLGVAPEEGKVGDGDGDRGVGVGVGGEGKKSG--EKDVNDVFSDYISRAKRRLGS

Query:  ISIKRH---DSGYKGKDNNAK-DDRRFSDYISRARANNNLRATSST
        I+ K+H   DS  KGK+N+ K +DRRFSDYI+RAR  + LRATSS+
Subjt:  ISIKRH---DSGYKGKDNNAK-DDRRFSDYISRARANNNLRATSST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGGAACTCAAAATCCCCGAAGCGCAATCCCGTGTGCGAGAAACTTCGCAAGATTCTTGGCGGGTATCCTAATTTGATAAAATTCCGTCCTCTCTCAAACCGGCA
GCCGGAGGATAACAAGGTGCTGGGGGTGGCTCCCGAAGAGGGCAAAGTTGGTGACGGTGATGGTGATCGAGGAGTGGGAGTGGGAGTGGGAGGTGAAGGCAAAAAATCAG
GAGAAAAAGACGTAAACGATGTGTTCAGTGATTACATCAGTCGGGCAAAACGTAGGCTCGGGAGCATATCAATCAAGCGACACGATTCGGGTTACAAGGGAAAAGACAAC
AACGCCAAAGACGATCGGCGCTTTTCAGATTATATCAGTCGTGCACGTGCTAACAATAACCTCAGGGCTACCTCCTCAACCTCAATCAAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGGAACTCAAAATCCCCGAAGCGCAATCCCGTGTGCGAGAAACTTCGCAAGATTCTTGGCGGGTATCCTAATTTGATAAAATTCCGTCCTCTCTCAAACCGGCA
GCCGGAGGATAACAAGGTGCTGGGGGTGGCTCCCGAAGAGGGCAAAGTTGGTGACGGTGATGGTGATCGAGGAGTGGGAGTGGGAGTGGGAGGTGAAGGCAAAAAATCAG
GAGAAAAAGACGTAAACGATGTGTTCAGTGATTACATCAGTCGGGCAAAACGTAGGCTCGGGAGCATATCAATCAAGCGACACGATTCGGGTTACAAGGGAAAAGACAAC
AACGCCAAAGACGATCGGCGCTTTTCAGATTATATCAGTCGTGCACGTGCTAACAATAACCTCAGGGCTACCTCCTCAACCTCAATCAAA
Protein sequenceShow/hide protein sequence
MGRNSKSPKRNPVCEKLRKILGGYPNLIKFRPLSNRQPEDNKVLGVAPEEGKVGDGDGDRGVGVGVGGEGKKSGEKDVNDVFSDYISRAKRRLGSISIKRHDSGYKGKDN
NAKDDRRFSDYISRARANNNLRATSSTSIK