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MS011882 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011882
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein ROOT PRIMORDIUM DEFECTIVE 1-like
Genome locationscaffold1150:190639..191109
RNA-Seq ExpressionMS011882
SyntenyMS011882
Gene Ontology termsNA
InterPro domainsIPR036312 - Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571480.1 hypothetical protein SDJN03_28208, partial [Cucurbita argyrosperma subsp. sororia]3.5e-5065.64Show/hide
Query:  MGRFKIAHLLAAL--CVLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEPIPILPPPSPVDEDGHG----HGHGHGHGHGHQHQHHHR
        MGR + A+ LAAL   + ++IP+++ QAWS      PP+PLCSSQFALASYACARLPLNPEP+PI PP SP    GHG    H H H HGHGH   HHH 
Subjt:  MGRFKIAHLLAAL--CVLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEPIPILPPPSPVDEDGHG----HGHGHGHGHGHQHQHHHR

Query:  RRHHTHSPVAEECCRWAREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI
          H + SP+ EECCRWAR+VDSECVCDAL HLANF++RPSH FTVAIT+DC+VTYSC GRIKI
Subjt:  RRHHTHSPVAEECCRWAREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI

XP_015891580.1 uncharacterized protein DDB_G0272724 [Ziziphus jujuba]1.2e-3456.43Show/hide
Query:  VLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEPIPILPPPSPVDEDGHGHGHGHGHGHGHQHQHHHRRRHHTHSPVAEECCRWAREV
        +L+L+P++E    SQ  P + PRPLC+SQFALASYAC+ +P  P P     PPSP D  GH HGHGHGH HGH H+H HR RH   SP  E CCRW +++
Subjt:  VLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEPIPILPPPSPVDEDGHGHGHGHGHGHGHQHQHHHRRRHHTHSPVAEECCRWAREV

Query:  DSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGR
        DS+CVCD L+HL NFL RP+H ++V + D C VT+SC GR
Subjt:  DSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGR

XP_018503036.1 PREDICTED: uncharacterized protein LOC103947562 [Pyrus x bretschneideri]3.5e-3450.9Show/hide
Query:  MGRFKIAHLLAALCVLVLIPQMEGQAWSQPSPLLPP-RPLCSSQFALASYACARLPLNPEPIPI---LPPPSPVD---EDGHGHGHGHGHGHGHQHQH-H
        MGR KI  L      L+++P+ME Q       L PP RP C+SQFALA+YAC+ LP  P P P     PPPSP D   E+ H HGHGHGHGH H H+H H
Subjt:  MGRFKIAHLLAALCVLVLIPQMEGQAWSQPSPLLPP-RPLCSSQFALASYACARLPLNPEPIPI---LPPPSPVD---EDGHGHGHGHGHGHGHQHQH-H

Query:  HRRRHHTHS--PVAEECCRWAREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI
        HR RHH H   P  + CCRW  ++D++CVC+ L+HL NFL+RP+H ++V I + C VTY+C   I+I
Subjt:  HRRRHHTHS--PVAEECCRWAREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI

XP_022155619.1 uncharacterized protein LOC111022709 [Momordica charantia]2.8e-8498.74Show/hide
Query:  MGRFKIAHLLAALCVLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEPIPILPPPSPVDED--GHGHGHGHGHGHGHQHQHHHRRRHH
        MGRFKIAHLLAALCVLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEPIPILPPPSPVDED  GHGHGHGHGHGHGHQHQHHHRRRHH
Subjt:  MGRFKIAHLLAALCVLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEPIPILPPPSPVDED--GHGHGHGHGHGHGHQHQHHHRRRHH

Query:  THSPVAEECCRWAREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI
        THSPVAEECCRWAREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI
Subjt:  THSPVAEECCRWAREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI

XP_022967638.1 uncharacterized protein LOC111467082 [Cucurbita maxima]1.1e-5168.32Show/hide
Query:  MGRFKIAHLLAAL--CVLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEPIPILPPPSPVDEDGHGHGHGHGHGH--GHQHQHHHRRR
        MGR + A+  AAL   + ++ P++E QAWS      PP+PLCSSQFALASYACARLPLN EP+PI PPPSP  E+GH HGH HGHGH  GH H HHHR R
Subjt:  MGRFKIAHLLAAL--CVLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEPIPILPPPSPVDEDGHGHGHGHGHGH--GHQHQHHHRRR

Query:  HHTHSPVAEECCRWAREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI
            SP+ EECCRWAR+VD+ECVCDAL HLANF++RPSH FTVAIT+DCIVTYSC GRIKI
Subjt:  HHTHSPVAEECCRWAREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI

TrEMBL top hitse value%identityAlignment
A0A498K3G3 Uncharacterized protein4.9e-3450Show/hide
Query:  RFKIAHLLAALCVLVLIPQMEGQAWSQPSPLLPP-RPLCSSQFALASYACARLPL--NPEPIPILPPPSPVDED-------GHGHGHGHGHGHGHQHQH-
        R KI  L      L+ +P+M+ Q       L PP RPLC+SQFALA+YAC+ LP    P P P  PPPSP D+D       G  HGHGHGHGH H H+H 
Subjt:  RFKIAHLLAALCVLVLIPQMEGQAWSQPSPLLPP-RPLCSSQFALASYACARLPL--NPEPIPILPPPSPVDED-------GHGHGHGHGHGHGHQHQH-

Query:  HHRRRHHTHS--PVAEECCRWAREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI
        HHR RHH H   P  + CC+W  ++D+ECVC+ L+HL NFLIRP+HA++VA+ + C V+Y+C   I+I
Subjt:  HHRRRHHTHS--PVAEECCRWAREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI

A0A540MKM3 Uncharacterized protein2.2e-3450Show/hide
Query:  MGRFKIAHLLAALCVLVLIPQMEGQAWSQPSPLLPP-RPLCSSQFALASYACARLPL--NPEPIPILPPPSPVDED-------GHGHGHGHGHGHGHQHQ
        M R KI  L      L+ +P+M+ Q       L PP RPLC+SQFALA+YAC+ LP    P P P  PPPSP D+D       G G+GHGHGHGH H H+
Subjt:  MGRFKIAHLLAALCVLVLIPQMEGQAWSQPSPLLPP-RPLCSSQFALASYACARLPL--NPEPIPILPPPSPVDED-------GHGHGHGHGHGHGHQHQ

Query:  H-HHRRRHHTHS--PVAEECCRWAREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI
        H HHR RHH H   P  + CC+W  ++D+ECVC+ L+HL NFLIRP+HA++VA+ + C V+Y+C   I+I
Subjt:  H-HHRRRHHTHS--PVAEECCRWAREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI

A0A6J1DQT3 uncharacterized protein LOC1110227091.4e-8498.74Show/hide
Query:  MGRFKIAHLLAALCVLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEPIPILPPPSPVDED--GHGHGHGHGHGHGHQHQHHHRRRHH
        MGRFKIAHLLAALCVLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEPIPILPPPSPVDED  GHGHGHGHGHGHGHQHQHHHRRRHH
Subjt:  MGRFKIAHLLAALCVLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEPIPILPPPSPVDED--GHGHGHGHGHGHGHQHQHHHRRRHH

Query:  THSPVAEECCRWAREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI
        THSPVAEECCRWAREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI
Subjt:  THSPVAEECCRWAREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI

A0A6J1HVN1 uncharacterized protein LOC1114670825.3e-5268.32Show/hide
Query:  MGRFKIAHLLAAL--CVLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEPIPILPPPSPVDEDGHGHGHGHGHGH--GHQHQHHHRRR
        MGR + A+  AAL   + ++ P++E QAWS      PP+PLCSSQFALASYACARLPLN EP+PI PPPSP  E+GH HGH HGHGH  GH H HHHR R
Subjt:  MGRFKIAHLLAAL--CVLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEPIPILPPPSPVDEDGHGHGHGHGHGH--GHQHQHHHRRR

Query:  HHTHSPVAEECCRWAREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI
            SP+ EECCRWAR+VD+ECVCDAL HLANF++RPSH FTVAIT+DCIVTYSC GRIKI
Subjt:  HHTHSPVAEECCRWAREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI

A0A6P4AZX7 uncharacterized protein DDB_G02727245.8e-3556.43Show/hide
Query:  VLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEPIPILPPPSPVDEDGHGHGHGHGHGHGHQHQHHHRRRHHTHSPVAEECCRWAREV
        +L+L+P++E    SQ  P + PRPLC+SQFALASYAC+ +P  P P     PPSP D  GH HGHGHGH HGH H+H HR RH   SP  E CCRW +++
Subjt:  VLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEPIPILPPPSPVDEDGHGHGHGHGHGHGHQHQHHHRRRHHTHSPVAEECCRWAREV

Query:  DSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGR
        DS+CVCD L+HL NFL RP+H ++V + D C VT+SC GR
Subjt:  DSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G63095.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.4e-2028.96Show/hide
Query:  PPRPLCSSQFALASYACARLPLN--PEPIPILPPPSPV-----DEDGHGHGHGHGHGHGH----------------------------------------
        PPRPLC+SQ+ALA+YAC+RLP++  P P PI PPP+P+     + D H H H H H H H                                        
Subjt:  PPRPLCSSQFALASYACARLPLN--PEPIPILPPPSPV-----DEDGHGHGHGHGHGHGH----------------------------------------

Query:  --------------------------------------------------QHQHHHRRRHHTHSP---VAEECCRWAREVDSECVCDALIHLANFLIRPS
                                                          +H  HH R HH H       +ECC+W +++D+ECVCD L+ L   L +P 
Subjt:  --------------------------------------------------QHQHHHRRRHHTHSP---VAEECCRWAREVDSECVCDALIHLANFLIRPS

Query:  HAFTVAITDDCIVTYSCNGRI
        H +TV + + CIVT+ C GR+
Subjt:  HAFTVAITDDCIVTYSCNGRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAGGTTCAAAATTGCTCACCTATTAGCAGCATTGTGTGTTTTAGTTCTGATACCCCAAATGGAGGGGCAAGCATGGTCACAGCCGTCGCCGTTGTTGCCTCCACG
TCCTCTATGTTCTTCACAATTTGCACTGGCGAGCTATGCATGTGCGAGGCTGCCTTTGAACCCAGAACCCATTCCAATTCTTCCGCCTCCTTCGCCGGTGGATGAGGATG
GACACGGGCACGGGCACGGGCACGGGCACGGGCACGGCCATCAGCACCAACACCACCATAGGCGCCGCCACCACACCCACTCACCGGTGGCAGAGGAATGTTGTCGATGG
GCGAGGGAGGTGGATAGCGAATGCGTGTGTGACGCATTAATTCACTTGGCCAACTTCCTGATTCGACCCTCTCATGCATTTACCGTCGCCATCACAGATGATTGCATTGT
CACTTACTCGTGCAATGGACGAATCAAGATT
mRNA sequenceShow/hide mRNA sequence
ATGGGGAGGTTCAAAATTGCTCACCTATTAGCAGCATTGTGTGTTTTAGTTCTGATACCCCAAATGGAGGGGCAAGCATGGTCACAGCCGTCGCCGTTGTTGCCTCCACG
TCCTCTATGTTCTTCACAATTTGCACTGGCGAGCTATGCATGTGCGAGGCTGCCTTTGAACCCAGAACCCATTCCAATTCTTCCGCCTCCTTCGCCGGTGGATGAGGATG
GACACGGGCACGGGCACGGGCACGGGCACGGGCACGGCCATCAGCACCAACACCACCATAGGCGCCGCCACCACACCCACTCACCGGTGGCAGAGGAATGTTGTCGATGG
GCGAGGGAGGTGGATAGCGAATGCGTGTGTGACGCATTAATTCACTTGGCCAACTTCCTGATTCGACCCTCTCATGCATTTACCGTCGCCATCACAGATGATTGCATTGT
CACTTACTCGTGCAATGGACGAATCAAGATT
Protein sequenceShow/hide protein sequence
MGRFKIAHLLAALCVLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEPIPILPPPSPVDEDGHGHGHGHGHGHGHQHQHHHRRRHHTHSPVAEECCRW
AREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI