CuGenDBv2

Gene ID	MS011884
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Small nuclear ribonucleoprotein Sm D1
Genome location	scaffold1150:196286..198981
RNA-Seq Expression	MS011884
Synteny	MS011884
Gene Ontology terms	GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0034715 - pICln-Sm protein complex (cellular component) GO:0097526 - spliceosomal tri-snRNP complex (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0034719 - SMN-Sm protein complex (cellular component) GO:0000243 - commitment complex (cellular component) GO:0005689 - U12-type spliceosomal complex (cellular component) GO:0005687 - U4 snRNP (cellular component) GO:0005686 - U2 snRNP (cellular component) GO:0005685 - U1 snRNP (cellular component) GO:0005682 - U5 snRNP (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR001163 - LSM domain, eukaryotic/archaea-type IPR010920 - LSM domain superfamily IPR027141 - Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3 IPR034102 - Small nuclear ribonucleoprotein D1

Homology

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GenBank top hits

e value

%identity

Alignment

KAB1203207.1 Small nuclear ribonucleoprotein Sm D1, partial [Morella rubra]

6.6e-51

96.43

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Query:  IHRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGR
        I+RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG PLGRGR
Subjt:  IHRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGR

Query:  GRGRGRGRGRGR
        GRGRGRGRGRGR
Subjt:  GRGRGRGRGRGR

XP_004150106.1 small nuclear ribonucleoprotein SmD1b [Cucumis sativus]

5.0e-51

99.09

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG PLGRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

XP_012473940.1 PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Gossypium raimondii]

1.5e-50

98.18

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG PLGRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

XP_022931093.1 small nuclear ribonucleoprotein SmD1b [Cucurbita moschata]

5.0e-51

99.09

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG PLGRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

XP_022963993.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata]

8.6e-51

98.18

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG P+GRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LD16 Small nuclear ribonucleoprotein Sm D1

2.4e-51

99.09

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG PLGRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

A0A1S3C0D0 Small nuclear ribonucleoprotein Sm D1

2.4e-51

99.09

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG PLGRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

A0A6J1DVC4 Small nuclear ribonucleoprotein Sm D1

2.4e-51

99.09

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG PLGRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

A0A6J1EXE6 Small nuclear ribonucleoprotein Sm D1

2.4e-51

99.09

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG PLGRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

A0A6J1K070 Small nuclear ribonucleoprotein Sm D1

2.4e-51

99.09

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG PLGRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

SwissProt top hits

e value

%identity

Alignment

P62314 Small nuclear ribonucleoprotein Sm D1

1.9e-37

74.55

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR
        RFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

Q3ZC10 Small nuclear ribonucleoprotein Sm D1

1.9e-37

74.55

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR
        RFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

Q4R5F6 Small nuclear ribonucleoprotein Sm D1

1.9e-37

74.55

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR
        RFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

Q9SSF1 Small nuclear ribonucleoprotein SmD1a

9.8e-50

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG  +GRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

Q9SY09 Small nuclear ribonucleoprotein SmD1b

8.9e-51

92.73

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG-MPLGRGRG
        RFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG +P GRGRG
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG-MPLGRGRG

Query:  RGRGRGRGRG
        RGRGRGRGRG
Subjt:  RGRGRGRGRG

Arabidopsis top hits

e value

%identity

Alignment

AT1G20580.1 Small nuclear ribonucleoprotein family protein

3.6e-07

28.57

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR
        + L + +   V++ELK+G +  G++   + + N  L+ +  T K      ++H+ +RG+ +R+ ++PD L    +      R+K K  + G+  GRG  R
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR

Query:  GR---GRGRGRG
        G+   G GRG G
Subjt:  GR---GRGRGRG

AT3G07590.1 Small nuclear ribonucleoprotein family protein

7.0e-51

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG  +GRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

AT3G07590.2 Small nuclear ribonucleoprotein family protein

7.0e-51

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG  +GRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

AT4G02840.1 Small nuclear ribonucleoprotein family protein

6.3e-52

92.73

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG-MPLGRGRG
        RFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG +P GRGRG
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG-MPLGRGRG

Query:  RGRGRGRGRG
        RGRGRGRGRG
Subjt:  RGRGRGRGRG

AT4G02840.2 Small nuclear ribonucleoprotein family protein

1.7e-49

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Query:  RFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        RFLMKLNNETVSIELKNGT+VHGTIT          GVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTA
Subjt:  RFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

Query:  G-MPLGRGRGRGRGRGRGRG
        G +P GRGRGRGRGRGRGRG
Subjt:  G-MPLGRGRGRGRGRGRGRG

Sequences

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CDS sequence

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ATCCACAGGTTTTTGATGAAGCTCAACAATGAGACCGTCTCAATCGAACTCAAAAATGGAACTGTTGTCCATGGCACTATCACAGGTGTGGATATTAGCATGAATACACA
TTTGAAGGCTGTGAAGCTTACTCTGAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGGGGTAACAACATCAGATATTATATTCTACCTGACAGCTTGAATC
TTGAGACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCGGGTATGCCTTTGGGACGTGGGCGGGGACGTGGCCGTGGTCGTGGTCGTGGGCGT
GGACGC

mRNA sequence

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Protein sequence

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IHRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMPLGRGRGRGRGRGRGR
GR

MS011884 (gene) of Bitter gourd (TR) v1 genome