CuGenDBv2

Gene ID	MS011896
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	chloroplast stem-loop binding protein of 41 kDa
Genome location	scaffold1150:260523..262402
RNA-Seq Expression	MS011896
Synteny	MS011896
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0005829 - cytosol (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003824 - catalytic activity (molecular function)
InterPro domains	IPR001509 - NAD-dependent epimerase/dehydratase IPR036291 - NAD(P)-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6571471.1 Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-194

86.39

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Query:  MAALA-SSCSLFSSTPSIHLPPSVSPYLPRLSL---SSPSALSSSFSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQ
        MAALA SS SLF+S PSIHLP S+SP L R SL   SSPSAL+SSF+ISHSF  FPS SR SNV SF++RA+SA +KK VLIVNTNSGGHA+IGFYFA+Q
Subjt:  MAALA-SSCSLFSSTPSIHLPPSVSPYLPRLSL---SSPSALSSSFSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQ

Query:  LLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEP
        LLGSGHEVTILTVGE+ SDKM KPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKD+++V PVIDWAKSSGVKQFLFISSAGIYKPTDEP
Subjt:  LLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEP

Query:  PHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS
        PHVEGDTV A+A HVGVE+YIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRP+PIPGSGMQLTNI+HVRDLSSMLTLAVEKPDEAH+NIFNCVS
Subjt:  PHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS

Query:  DRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKV
        DRAVTLDGMAKLCAQAAGR VNIVHYDPKAVG+DAKKAFPFR  HFYAEPRAAQ+ILGWK +T LPEDLKERFEEYVKIGRDKK+I+F+LDD ILESLKV
Subjt:  DRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKV

Query:  PVAA
        PVAA
Subjt:  PVAA

XP_022155645.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Momordica charantia]

1.2e-224

98.5

Show/hide

Query:  MAALASSCSLFSSTPSIHLPPSVSPYLPRLSLSSPSALSSSFSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGS
        MAALASSCSLFSSTPSIH+PPSVSPYLPRLSLSSPSALSS+FSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGS
Subjt:  MAALASSCSLFSSTPSIHLPPSVSPYLPRLSLSSPSALSSSFSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGS

Query:  GHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVE
        GHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVE
Subjt:  GHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVE

Query:  GDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAV
        GDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS RAV
Subjt:  GDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAV

Query:  TLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA
        TLDGMAKLCAQAAGRSV IVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKG TYLP+DLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA
Subjt:  TLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA

XP_022963688.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita moschata]

1.7e-194

86.63

Show/hide

Query:  MAALA-SSCSLFSSTPSIHLPPSVSPYLPRLSL---SSPSALSSSFSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQ
        MAALA SS SLF+S PSIHLP S+SP L R SL   SS SAL+SSF+ISHSF  FPS SR SNV SF++RA+SA +KK VLIVNTNSGGHA+IGFYFAKQ
Subjt:  MAALA-SSCSLFSSTPSIHLPPSVSPYLPRLSL---SSPSALSSSFSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQ

Query:  LLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEP
        LLGSGHEVTILTVGE+ SDKM KPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKD+++V PVIDWAKSSGVKQFLFISSAGIYKPTDEP
Subjt:  LLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEP

Query:  PHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS
        PHVEGDTV A+A HVGVE+YIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRP+PIPGSGMQLTNI+HVRDLSSMLTLAVEKPDEAH+NIFNCVS
Subjt:  PHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS

Query:  DRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKV
        DRAVTLDGMAKLCAQAAGR VNIVHYDPKAVG+DAKKAFPFR  HFYAEPRAAQ+ILGWK +T LPEDLKERFEEYVKIGRDKK+I+F+LDDKILESLKV
Subjt:  DRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKV

Query:  PVAA
        PVAA
Subjt:  PVAA

XP_022967430.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita maxima]

5.9e-195

86.63

Show/hide

Query:  MAALA-SSCSLFSSTPSIHLPPSVSPYLPRLS---LSSPSALSSSFSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQ
        MAALA SS SLF+S PSIHLP S+SP L R S   +SSPSAL+SSF+ISHSF  FPS SR SNV SF++RA+SA +KK VLIVNTNSGGHA+IGFYFAKQ
Subjt:  MAALA-SSCSLFSSTPSIHLPPSVSPYLPRLS---LSSPSALSSSFSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQ

Query:  LLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEP
        LLGSGHEVTILTVGE+ SDKM KPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKD+++V PVIDWAKSSGVKQFLFISSAGIYKPTDEP
Subjt:  LLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEP

Query:  PHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS
        PHVEGDTV A+A HVGVE+YIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRP+PIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAH+NIFNCVS
Subjt:  PHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS

Query:  DRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKV
        DRAVTLDGMAKLCAQAAGR VNIVHYDPK VG+DAKKAFPFR  HFYAEPRAAQ+ILGWK +T LPEDLKERFEEYVKIGRDKK+I+F+LDDKILESLKV
Subjt:  DRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKV

Query:  PVAA
        PVAA
Subjt:  PVAA

XP_038888331.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-like [Benincasa hispida]

7.5e-198

88.34

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Query:  MAALASSCSLFSSTPSIHLPPSVSPYLPRLSL---SSPSALSSSFSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQL
        MAALASS SLFSS PSIHLP S+SP  P LSL   S PS LSSS SISHSF S+PS  RPSNV SF++RATS  +KKKVLIVNTNSGGHA+IGFYFAKQL
Subjt:  MAALASSCSLFSSTPSIHLPPSVSPYLPRLSL---SSPSALSSSFSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQL

Query:  LGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEPP
        LGSGHEVTILTVGE+ SDKM KPPFNRFSEIVS GGKTVWGDPAE+GKVVAGASFDVVLDNNGKD++TV PVIDWAKSSGVKQFLFISSAGIYKPTDEPP
Subjt:  LGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEPP

Query:  HVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSD
        HVEGD V A+A HVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVR+RPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSD
Subjt:  HVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSD

Query:  RAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVP
        RAVTLDGMAKLCAQAAGR V+IVH+DPKAVG+DAKKAFPFR  HFYAEPRAAQDILGWKGTT LPEDLKERFEEYVKIGRDKK I+F+LDDKILESLKVP
Subjt:  RAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVP

Query:  VAA
        VAA
Subjt:  VAA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KE82 Epimerase domain-containing protein

1.4e-189

83.9

Show/hide

Query:  MAALASSCSLFSSTPSIHLPPSVSPYLPRLSL---SSPSALSSSFSISHS-----FPSFPSIS--RPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIG
        MAAL  S SLFSS PSI+ P S+SP  P  SL   S+ S +SSSFSISHS     + SF S S  RPS V SF++RA+S+  KKKVLIVNTNSGGHA+IG
Subjt:  MAALASSCSLFSSTPSIHLPPSVSPYLPRLSL---SSPSALSSSFSISHS-----FPSFPSIS--RPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIG

Query:  FYFAKQLLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIY
        FYFAKQLLGSGHEVTILTVGEQ SDKMNKPPFNRFSEIVS GGKTVWGDPAE+GKVV GASFDVVLDNNGKD++TV PVIDWAKSSGVKQFLFISSAGIY
Subjt:  FYFAKQLLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIY

Query:  KPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN
        K TDEPPHVEGD V A+A HVGVEKYIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRP+PIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN
Subjt:  KPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN

Query:  IFNCVSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKI
        IFNCVS RAVTLDGMAKLCAQAAGR VNIVHYDPKAVG+DAKKAFPFR  HFYAEPRAAQ+ILGW+GTT LPEDLKERFEEYVKIGRDKK+I+F+LDDKI
Subjt:  IFNCVSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKI

Query:  LESLKVPVAA
        LESL VPVAA
Subjt:  LESLKVPVAA

A0A5D3E2H3 Chloroplast stem-loop binding protein of 41 kDa a

1.8e-189

83.58

Show/hide

Query:  MAALASSCSLFSSTPSIHLPPSVSPYLPRLSL---SSPSALSSSFSISHS-----FPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFY
        MAAL  S SLFSS PSI+ P  +SP    LSL   S+ S +SSSFSISHS     + S  S  RPS V SF++RA+S+  KKKVLIVNTNSGGHA+IGFY
Subjt:  MAALASSCSLFSSTPSIHLPPSVSPYLPRLSL---SSPSALSSSFSISHS-----FPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFY

Query:  FAKQLLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKP
        FAK+LLGSGHEVTILTVGEQ SDKMNKPPFNRFSEIVS GGKTVWGDPAE+GKV+ GASFDVVLDNNGKD++TV PVIDWAKSSGVKQFLFISSAGIYKP
Subjt:  FAKQLLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKP

Query:  TDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIF
        TDEPPHVEGD V A+A HVGVEKY+AEVF SWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRP+PIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIF
Subjt:  TDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIF

Query:  NCVSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILE
        NCV+DRAVTLDGMAKLCAQAAGR VNIVHYDPKAVG+DAKKAFPFR  HFYAEPRAAQ+ILGWK TT LPEDLKERFEEYVKIGRDKK+I+F+LDDKILE
Subjt:  NCVSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILE

Query:  SLKVPVAA
        SLKVPVAA
Subjt:  SLKVPVAA

A0A6J1DN04 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

4.5e-225

98.75

Show/hide

Query:  MAALASSCSLFSSTPSIHLPPSVSPYLPRLSLSSPSALSSSFSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGS
        MAALASSCSLFSSTPSIHLPPSVSPYLPRLSLSSPSALSS+FSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGS
Subjt:  MAALASSCSLFSSTPSIHLPPSVSPYLPRLSLSSPSALSSSFSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGS

Query:  GHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVE
        GHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVE
Subjt:  GHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVE

Query:  GDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAV
        GDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS RAV
Subjt:  GDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAV

Query:  TLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA
        TLDGMAKLCAQAAGRSV IVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKG TYLP+DLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA
Subjt:  TLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA

A0A6J1HIM8 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

8.3e-195

86.63

Show/hide

Query:  MAALA-SSCSLFSSTPSIHLPPSVSPYLPRLSL---SSPSALSSSFSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQ
        MAALA SS SLF+S PSIHLP S+SP L R SL   SS SAL+SSF+ISHSF  FPS SR SNV SF++RA+SA +KK VLIVNTNSGGHA+IGFYFAKQ
Subjt:  MAALA-SSCSLFSSTPSIHLPPSVSPYLPRLSL---SSPSALSSSFSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQ

Query:  LLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEP
        LLGSGHEVTILTVGE+ SDKM KPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKD+++V PVIDWAKSSGVKQFLFISSAGIYKPTDEP
Subjt:  LLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEP

Query:  PHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS
        PHVEGDTV A+A HVGVE+YIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRP+PIPGSGMQLTNI+HVRDLSSMLTLAVEKPDEAH+NIFNCVS
Subjt:  PHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS

Query:  DRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKV
        DRAVTLDGMAKLCAQAAGR VNIVHYDPKAVG+DAKKAFPFR  HFYAEPRAAQ+ILGWK +T LPEDLKERFEEYVKIGRDKK+I+F+LDDKILESLKV
Subjt:  DRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKV

Query:  PVAA
        PVAA
Subjt:  PVAA

A0A6J1HUG4 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

2.9e-195

86.63

Show/hide

Query:  MAALA-SSCSLFSSTPSIHLPPSVSPYLPRLS---LSSPSALSSSFSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQ
        MAALA SS SLF+S PSIHLP S+SP L R S   +SSPSAL+SSF+ISHSF  FPS SR SNV SF++RA+SA +KK VLIVNTNSGGHA+IGFYFAKQ
Subjt:  MAALA-SSCSLFSSTPSIHLPPSVSPYLPRLS---LSSPSALSSSFSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQ

Query:  LLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEP
        LLGSGHEVTILTVGE+ SDKM KPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKD+++V PVIDWAKSSGVKQFLFISSAGIYKPTDEP
Subjt:  LLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEP

Query:  PHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS
        PHVEGDTV A+A HVGVE+YIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRP+PIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAH+NIFNCVS
Subjt:  PHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS

Query:  DRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKV
        DRAVTLDGMAKLCAQAAGR VNIVHYDPK VG+DAKKAFPFR  HFYAEPRAAQ+ILGWK +T LPEDLKERFEEYVKIGRDKK+I+F+LDDKILESLKV
Subjt:  DRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKV

Query:  PVAA
        PVAA
Subjt:  PVAA

SwissProt top hits

e value

%identity

Alignment

Q9LYA9 Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

1.6e-163

72.17

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Query:  MAALASSCSLFSS-----TPSIHLPPSVSPYLPRLSLSSPSALSSSFSISHSFPSFP-SISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFA
        MAAL+SS   FSS       ++ +PPS+  +    S SS S+LSSS S S S  +F    SR  +   FT++A+S   KK VLIVNTNSGGHA+IGFYFA
Subjt:  MAALASSCSLFSS-----TPSIHLPPSVSPYLPRLSLSSPSALSSSFSISHSFPSFP-SISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFA

Query:  KQLLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTD
        K+LL +GH VTILTVG++ S+KM KPPFNRFSEIVS GGKTVWG+PA V  VV G +FDVVLDNNGKD++TV PV+DWAKSSGVKQFLFISSAGIYK T+
Subjt:  KQLLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTD

Query:  EPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNC
        +PPHVEGD V A+A HV VEKY+AE FG+WA FRPQYMIGSGNNKDCEEWFFDRIVRDR VPIPGSG+QLTNI+HVRDLSSMLT AV  P+ A  NIFNC
Subjt:  EPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNC

Query:  VSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESL
        VSDRAVTLDGMAKLCA AAG++V IVHYDPKA+G+DAKKAF FR  HFYAEPRAA+D+LGW+  T LPEDLKERFEEYVKIGRDKK I+F+LDDKILE+L
Subjt:  VSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESL

Query:  KVPVAA
        K PVAA
Subjt:  KVPVAA

Q9SA52 Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic

2.7e-49

35.45

Show/hide

Query:  SAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAE---VGKVVAGASFDVVLDNNGKDVET
        SA ++KK+LI+    GG   IG + ++ L+  GH+VT+ T G+    K      ++     S+    + GD  +   V   ++   FDVV D NG++ E 
Subjt:  SAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAE---VGKVVAGASFDVVLDNNGKDVET

Query:  VGPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVNANASHVG---VEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGM
        V P+++      ++Q+++ SSAG+Y  +D  PH E D V+  + H G    E  +     +W   RP Y+ G  N    EEWFF R+   RP+P+P SG+
Subjt:  VGPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVNANASHVG---VEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGM

Query:  QLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAG-RSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYL
        Q++ + HV+DL++   L V   ++A   IFN   ++ VT DG+AK CA+A G     IVHY+PK      KKAFPFR  HF+A    A+ +LGWK    L
Subjt:  QLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAG-RSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYL

Query:  PEDLKERFEEYVKIGRDKKSIQFDLDDKIL
         E L + +      G  +K   F  DD IL
Subjt:  PEDLKERFEEYVKIGRDKKSIQFDLDDKIL

Arabidopsis top hits

e value

%identity

Alignment

AT1G09340.1 chloroplast RNA binding

1.9e-50

35.45

Show/hide

Query:  SAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAE---VGKVVAGASFDVVLDNNGKDVET
        SA ++KK+LI+    GG   IG + ++ L+  GH+VT+ T G+    K      ++     S+    + GD  +   V   ++   FDVV D NG++ E 
Subjt:  SAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAE---VGKVVAGASFDVVLDNNGKDVET

Query:  VGPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVNANASHVG---VEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGM
        V P+++      ++Q+++ SSAG+Y  +D  PH E D V+  + H G    E  +     +W   RP Y+ G  N    EEWFF R+   RP+P+P SG+
Subjt:  VGPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVNANASHVG---VEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGM

Query:  QLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAG-RSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYL
        Q++ + HV+DL++   L V   ++A   IFN   ++ VT DG+AK CA+A G     IVHY+PK      KKAFPFR  HF+A    A+ +LGWK    L
Subjt:  QLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAG-RSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYL

Query:  PEDLKERFEEYVKIGRDKKSIQFDLDDKIL
         E L + +      G  +K   F  DD IL
Subjt:  PEDLKERFEEYVKIGRDKKSIQFDLDDKIL

AT3G63140.1 chloroplast stem-loop binding protein of 41 kDa

1.2e-164

72.17

Show/hide

Query:  MAALASSCSLFSS-----TPSIHLPPSVSPYLPRLSLSSPSALSSSFSISHSFPSFP-SISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFA
        MAAL+SS   FSS       ++ +PPS+  +    S SS S+LSSS S S S  +F    SR  +   FT++A+S   KK VLIVNTNSGGHA+IGFYFA
Subjt:  MAALASSCSLFSS-----TPSIHLPPSVSPYLPRLSLSSPSALSSSFSISHSFPSFP-SISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFA

Query:  KQLLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTD
        K+LL +GH VTILTVG++ S+KM KPPFNRFSEIVS GGKTVWG+PA V  VV G +FDVVLDNNGKD++TV PV+DWAKSSGVKQFLFISSAGIYK T+
Subjt:  KQLLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTD

Query:  EPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNC
        +PPHVEGD V A+A HV VEKY+AE FG+WA FRPQYMIGSGNNKDCEEWFFDRIVRDR VPIPGSG+QLTNI+HVRDLSSMLT AV  P+ A  NIFNC
Subjt:  EPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNC

Query:  VSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESL
        VSDRAVTLDGMAKLCA AAG++V IVHYDPKA+G+DAKKAF FR  HFYAEPRAA+D+LGW+  T LPEDLKERFEEYVKIGRDKK I+F+LDDKILE+L
Subjt:  VSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESL

Query:  KVPVAA
        K PVAA
Subjt:  KVPVAA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTGCTCTTGCTTCTTCATGTTCCCTCTTCTCCTCCACGCCCTCCATCCATCTTCCACCTTCTGTTTCTCCTTATCTTCCACGTCTATCACTCTCTTCCCCTTCTGC
TCTCTCATCCTCTTTCTCCATCTCCCATTCTTTTCCCTCTTTCCCCTCCATTTCCAGACCCTCCAACGTTTCCTCCTTCACTCTCAGGGCTACCTCTGCTCAGAATAAGA
AGAAGGTCTTGATTGTCAATACGAACAGCGGCGGCCATGCCATAATTGGCTTCTACTTTGCAAAACAGCTTCTGGGTTCCGGCCATGAGGTCACAATTCTCACTGTGGGT
GAACAGGGTTCGGACAAGATGAACAAGCCTCCATTTAACAGATTCTCAGAAATTGTGAGTGCCGGAGGGAAGACTGTATGGGGGGATCCTGCAGAAGTTGGGAAGGTCGT
GGCAGGGGCCTCATTTGACGTGGTATTGGATAACAATGGCAAGGACGTTGAAACTGTGGGACCTGTGATTGATTGGGCAAAGAGCTCTGGCGTGAAGCAGTTTCTATTTA
TCAGCAGTGCTGGAATTTATAAGCCAACTGACGAACCTCCTCATGTTGAAGGGGATACTGTGAATGCTAATGCTAGTCATGTTGGTGTTGAGAAATATATTGCAGAGGTC
TTCGGCAGTTGGGCTATATTCCGTCCACAGTACATGATTGGATCCGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATCGAATCGTCCGGGACAGACCGGTTCCAAT
TCCAGGCTCAGGGATGCAGCTGACGAACATCGCCCATGTCAGGGACTTGTCTTCTATGCTGACACTGGCAGTAGAGAAGCCAGACGAAGCACACTCTAACATATTCAACT
GCGTAAGCGATCGCGCCGTGACCCTTGATGGAATGGCCAAGTTATGTGCTCAAGCAGCAGGACGTTCGGTTAACATTGTGCATTATGATCCAAAAGCAGTTGGGATTGAT
GCAAAGAAAGCTTTTCCTTTCAGGACATATCATTTCTATGCAGAGCCGAGAGCGGCTCAGGATATTCTAGGCTGGAAAGGCACCACATATCTTCCTGAAGATTTGAAGGA
GCGATTTGAAGAGTACGTGAAGATTGGTAGAGACAAGAAATCTATTCAGTTTGATTTAGATGATAAGATACTAGAGTCCCTAAAAGTTCCAGTAGCTGCT

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAALASSCSLFSSTPSIHLPPSVSPYLPRLSLSSPSALSSSFSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVG
EQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEV
FGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGID
AKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA

MS011896 (gene) of Bitter gourd (TR) v1 genome