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MS011926 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011926
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionvacuolar protein sorting-associated protein 55 homolog
Genome locationscaffold739:190495..191961
RNA-Seq ExpressionMS011926
SyntenyMS011926
Gene Ontology termsGO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway (biological process)
GO:0005768 - endosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007262 - Vps55/LEPROT


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150170.1 vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus]1.3e-6189.21Show/hide
Query:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH
        MADLP SLQAC  MGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF GSDSSSLYT+SNDSWINATKFLTGAST+GSIAIP+ILKH
Subjt:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH

Query:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF
        AGIIGWGA+AMDLSSF+VFV+AILCF+ M+EDDD Y+MF
Subjt:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF

XP_022155500.1 vacuolar protein sorting-associated protein 55 homolog [Momordica charantia]3.5e-70100Show/hide
Query:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH
        MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH
Subjt:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH

Query:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF
        AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF
Subjt:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF

XP_022923424.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita moschata]6.0e-6291.37Show/hide
Query:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH
        MADLPGSLQAC SMGKVAFLAILVSGGIV+QILACALYNNWWPMLSVIMYVLLPMPLLFF GSDSSSLYT+S+DSWINATKFLTGASTIGSIAIPIILKH
Subjt:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH

Query:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF
        AGIIGWGA+AMDLSSF+VFVIAILCF+ M+E DD YTMF
Subjt:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF

XP_022965211.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita maxima]7.8e-6291.37Show/hide
Query:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH
        MADLPGSLQAC SMGKVAFLAILVSGGIV+QILACALYNNWWPMLSVIMYVLLPMPLLFF GSDSSSLYT+S DSWINATKFLTGASTIGSIAIPIILKH
Subjt:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH

Query:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF
        AGIIGWGA+AMDLSSF+VFVIAILCF+ M+E DD YTMF
Subjt:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF

XP_038906097.1 vacuolar protein sorting-associated protein 55 homolog [Benincasa hispida]7.1e-6392.09Show/hide
Query:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH
        MADLPGSLQAC SMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF GSDSSSLYT+SN+SWINATKFLTGAST+GSIAIPIILKH
Subjt:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH

Query:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF
        AGIIGWGA+AMDLSSF+VFVIAILCF+ M+EDDD YTMF
Subjt:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF

TrEMBL top hitse value%identityAlignment
A0A0A0L5B3 Uncharacterized protein6.5e-6289.21Show/hide
Query:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH
        MADLP SLQAC  MGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF GSDSSSLYT+SNDSWINATKFLTGAST+GSIAIP+ILKH
Subjt:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH

Query:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF
        AGIIGWGA+AMDLSSF+VFV+AILCF+ M+EDDD Y+MF
Subjt:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF

A0A1S3BJT4 vacuolar protein sorting-associated protein 55 homolog1.1e-6189.21Show/hide
Query:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH
        MADLP SLQAC  MGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF GSDSSSLYT+SNDSWINATKFLTGAST+GSIAIP+ILKH
Subjt:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH

Query:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF
        AGIIGWGA+AMDLSSF+VFV+AILCF+ M+EDDD Y+MF
Subjt:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF

A0A6J1DML0 vacuolar protein sorting-associated protein 55 homolog1.7e-70100Show/hide
Query:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH
        MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH
Subjt:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH

Query:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF
        AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF
Subjt:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF

A0A6J1E6D1 vacuolar protein sorting-associated protein 55 homolog2.9e-6291.37Show/hide
Query:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH
        MADLPGSLQAC SMGKVAFLAILVSGGIV+QILACALYNNWWPMLSVIMYVLLPMPLLFF GSDSSSLYT+S+DSWINATKFLTGASTIGSIAIPIILKH
Subjt:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH

Query:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF
        AGIIGWGA+AMDLSSF+VFVIAILCF+ M+E DD YTMF
Subjt:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF

A0A6J1HL31 vacuolar protein sorting-associated protein 55 homolog3.8e-6291.37Show/hide
Query:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH
        MADLPGSLQAC SMGKVAFLAILVSGGIV+QILACALYNNWWPMLSVIMYVLLPMPLLFF GSDSSSLYT+S DSWINATKFLTGASTIGSIAIPIILKH
Subjt:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH

Query:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF
        AGIIGWGA+AMDLSSF+VFVIAILCF+ M+E DD YTMF
Subjt:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSYTMF

SwissProt top hitse value%identityAlignment
P47111 Vacuolar protein sorting-associated protein 551.4e-0827.13Show/hide
Query:  KVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSD---SSSLYTESNDSWINATKFLTGASTIGSIAIPIILKHAGIIGWGALAMD
        K+  L+  ++ G ++ IL+CAL++N++P+  +++++L P+P   F   +   +S   ++S+++  +   FLTG      IA+P++  H  +IG  +  M 
Subjt:  KVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSD---SSSLYTESNDSWINATKFLTGASTIGSIAIPIILKHAGIIGWGALAMD

Query:  LSSFLVFVIAILCFLW-----MNEDDDSY
        +   L+   +I+ F W      NEDD  +
Subjt:  LSSFLVFVIAILCFLW-----MNEDDDSY

Q18319 Vacuolar protein sorting-associated protein 55 homolog4.4e-0732.28Show/hide
Query:  MGKVAFLAILVSGGIV---MQILACAL--YNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKHAGIIGWGA
        MG V  +A L   G+V     +L CAL  Y  W PM  +  YVL P+PLL           T   ++ I    F+T    I + A+PI+L HAG I   A
Subjt:  MGKVAFLAILVSGGIV---MQILACAL--YNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKHAGIIGWGA

Query:  LAMDLSSFLVFVIAILCFLWMNEDDDS
          +  +  ++    I+ + +++ DDDS
Subjt:  LAMDLSSFLVFVIAILCFLWMNEDDDS

Q54VP1 Vacuolar protein sorting-associated protein 55 homolog2.2e-0629.82Show/hide
Query:  GIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKHAGIIGWGALAMDLSSFLVFVIAILCF
        G++  ILAC + ++ +P++ V  Y L P P +     DS   ++    ++ +   FLTG       AIP+IL H+ II   ALA  ++  +     I+ F
Subjt:  GIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKHAGIIGWGALAMDLSSFLVFVIAILCF

Query:  LWM----NEDDDSY
        LW     N++D+++
Subjt:  LWM----NEDDDSY

Q9AST6 Vacuolar protein sorting-associated protein 55 homolog5.3e-5373.53Show/hide
Query:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH
        MAD+PG L+ C  MGK+AFLAILVS GIV+QILACAL+NNWWPMLSVIMYVLLPMPLLFFGGSDS+SL+ ES++SWINA KFLTGAS +GS+AIP ILKH
Subjt:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH

Query:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSY
        AG+IGWGALA+DLSS++VF++AIL ++ + +  D+Y
Subjt:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSY

Q9UUH1 Vacuolar protein sorting-associated protein 552.0e-0731.53Show/hide
Query:  KVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMP-LLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKHAGIIGWGALAMD-L
        K+  L+ +++ G ++ IL+CAL+ NW+P+L VI ++L P+P LL    S S     E + + ++  +F  GA+     A+PI+  + G+IG  A  M  +
Subjt:  KVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMP-LLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKHAGIIGWGALAMD-L

Query:  SSFLVFVIAIL
           ++F++  L
Subjt:  SSFLVFVIAIL

Arabidopsis top hitse value%identityAlignment
AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein3.8e-5473.53Show/hide
Query:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH
        MAD+PG L+ C  MGK+AFLAILVS GIV+QILACAL+NNWWPMLSVIMYVLLPMPLLFFGGSDS+SL+ ES++SWINA KFLTGAS +GS+AIP ILKH
Subjt:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH

Query:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSY
        AG+IGWGALA+DLSS++VF++AIL ++ + +  D+Y
Subjt:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSY

AT1G32410.2 Vacuolar protein sorting 55 (VPS55) family protein3.8e-5473.53Show/hide
Query:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH
        MAD+PG L+ C  MGK+AFLAILVS GIV+QILACAL+NNWWPMLSVIMYVLLPMPLLFFGGSDS+SL+ ES++SWINA KFLTGAS +GS+AIP ILKH
Subjt:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH

Query:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSY
        AG+IGWGALA+DLSS++VF++AIL ++ + +  D+Y
Subjt:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSY

AT1G32410.3 Vacuolar protein sorting 55 (VPS55) family protein3.8e-5473.53Show/hide
Query:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH
        MAD+PG L+ C  MGK+AFLAILVS GIV+QILACAL+NNWWPMLSVIMYVLLPMPLLFFGGSDS+SL+ ES++SWINA KFLTGAS +GS+AIP ILKH
Subjt:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH

Query:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSY
        AG+IGWGALA+DLSS++VF++AIL ++ + +  D+Y
Subjt:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSY

AT1G32410.4 Vacuolar protein sorting 55 (VPS55) family protein3.8e-5473.53Show/hide
Query:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH
        MAD+PG L+ C  MGK+AFLAILVS GIV+QILACAL+NNWWPMLSVIMYVLLPMPLLFFGGSDS+SL+ ES++SWINA KFLTGAS +GS+AIP ILKH
Subjt:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH

Query:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSY
        AG+IGWGALA+DLSS++VF++AIL ++ + +  D+Y
Subjt:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSY

AT1G32410.5 Vacuolar protein sorting 55 (VPS55) family protein3.8e-5473.53Show/hide
Query:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH
        MAD+PG L+ C  MGK+AFLAILVS GIV+QILACAL+NNWWPMLSVIMYVLLPMPLLFFGGSDS+SL+ ES++SWINA KFLTGAS +GS+AIP ILKH
Subjt:  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKH

Query:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSY
        AG+IGWGALA+DLSS++VF++AIL ++ + +  D+Y
Subjt:  AGIIGWGALAMDLSSFLVFVIAILCFLWMNEDDDSY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGACTTACCAGGTTCCTTGCAAGCCTGCTTTAGTATGGGGAAGGTGGCATTCTTAGCAATTTTGGTTTCTGGAGGAATTGTAATGCAGATATTGGCATGTGCCCT
GTACAATAATTGGTGGCCAATGCTAAGTGTGATAATGTATGTGCTTCTCCCCATGCCTTTATTGTTCTTTGGGGGGTCAGATAGTTCTTCCTTATATACCGAATCGAACG
ACAGCTGGATCAACGCAACGAAATTCTTGACTGGAGCTTCGACTATAGGAAGCATTGCCATCCCCATCATTCTGAAGCATGCCGGGATCATCGGCTGGGGGGCACTGGCT
ATGGACCTCTCATCATTTTTAGTATTCGTGATCGCCATTTTGTGTTTCTTATGGATGAACGAAGACGACGACAGCTACACCATGTTC
mRNA sequenceShow/hide mRNA sequence
ATGGCAGACTTACCAGGTTCCTTGCAAGCCTGCTTTAGTATGGGGAAGGTGGCATTCTTAGCAATTTTGGTTTCTGGAGGAATTGTAATGCAGATATTGGCATGTGCCCT
GTACAATAATTGGTGGCCAATGCTAAGTGTGATAATGTATGTGCTTCTCCCCATGCCTTTATTGTTCTTTGGGGGGTCAGATAGTTCTTCCTTATATACCGAATCGAACG
ACAGCTGGATCAACGCAACGAAATTCTTGACTGGAGCTTCGACTATAGGAAGCATTGCCATCCCCATCATTCTGAAGCATGCCGGGATCATCGGCTGGGGGGCACTGGCT
ATGGACCTCTCATCATTTTTAGTATTCGTGATCGCCATTTTGTGTTTCTTATGGATGAACGAAGACGACGACAGCTACACCATGTTC
Protein sequenceShow/hide protein sequence
MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKHAGIIGWGALA
MDLSSFLVFVIAILCFLWMNEDDDSYTMF