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MS011928 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011928
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 reverse transcriptase-like
Genome locationscaffold739:201456..202093
RNA-Seq ExpressionMS011928
SyntenyMS011928
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2665314.1 hypothetical protein I3760_15G002700 [Carya illinoinensis]3.2e-3039.17Show/hide
Query:  YLSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSL
        +LSLF LP++V   + SLFRKFLW G  E+   HL+ W+KV  P    GLGI DLK++N A L KW+WR+H+  +ALW+ VI  K+G     LK    S 
Subjt:  YLSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSL

Query:  NSSEGPWKSIYKQTNKA---IYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELW--DDNTKAWNMHFRMNLNDDEIQERMSLSS
         SS     S++K   K      +N   KVGNG+  LFW DLW G + L   F  L+++   + A++ + +   +N   WN+ F+ ++ND E  E  +L  
Subjt:  NSSEGPWKSIYKQTNKA---IYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELW--DDNTKAWNMHFRMNLNDDEIQERMSLSS

Query:  ILSSF-FATKRSDRWVW
         L S    T+R D   W
Subjt:  ILSSF-FATKRSDRWVW

KAG5613410.1 hypothetical protein H5410_024691 [Solanum commersonii]1.7e-3137.26Show/hide
Query:  YLSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSL
        ++SL  +P+KV   L+ +   FLW GN +   IHL++W KV LP+   GLGI DL L N   L KW WR++     LW+ VI AK+G   +    +  S 
Subjt:  YLSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSL

Query:  NSSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELWDDNTKAWNMHFRMNLNDDEIQERMSL-SSILSS
        +   G W+ I K   K  +T+    VGNG+   FW D+W+G +PLM+ F  ++Q+     ++I++  +DN   WN+  R NLND E++E  SL ++I +S
Subjt:  NSSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELWDDNTKAWNMHFRMNLNDDEIQERMSL-SSILSS

Query:  FFATKRSDRWVW
           ++R D+ +W
Subjt:  FFATKRSDRWVW

RVW49730.1 putative ribonuclease H protein [Vitis vinifera]1.4e-3036.32Show/hide
Query:  LSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSLN
        LSLF +P  V+  LE L R FLW G   +  +HL+ WE V   + + GLGI  + L N   L KW+WRF   K  LW++VI+ KFG +  D + ++    
Subjt:  LSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSLN

Query:  SSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELWDDN--TKAWNMHFRMNLNDDEIQERMSLSSILSS
           G WK I K+ +   + NI  KVG G    FW D W G + L   F LL++L   + A++ E+WD +    +WN+ F  + ND E+    SL S+L  
Subjt:  SSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELWDDN--TKAWNMHFRMNLNDDEIQERMSLSSILSS

Query:  FFATKRSDRWVW
        +  +   D   W
Subjt:  FFATKRSDRWVW

RVW55888.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.1e-3035.98Show/hide
Query:  YLSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSL
        ++SLF +P KV   LE + R+FLW   +E+  IHL+RWE +   +   GLG+  LK +N A L KW+WRF I +++ WRRVI+ KFG         +   
Subjt:  YLSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSL

Query:  NSSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELW---DDNTKAWNMHFRMNLNDDEIQERMSLSSIL
        +   G WK I K   +  +  I   +GNG+ T FW D+W+G S L   F LL+++     A +A+LW   +     W +HFR    D E++E       +
Subjt:  NSSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELW---DDNTKAWNMHFRMNLNDDEIQERMSLSSIL

Query:  SSFFATKRSDRWVW
        S+    +R D  VW
Subjt:  SSFFATKRSDRWVW

RVW79604.1 putative ribonuclease H protein [Vitis vinifera]4.1e-3036.79Show/hide
Query:  LSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSLN
        LSLF +P  V+  LE L R FLW G   +  IHL+ WE V   + + GLGI  + L N A L KWIWRF   K+ LW++VI  K+G + F  + ++    
Subjt:  LSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSLN

Query:  SSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELWDDN--TKAWNMHFRMNLNDDEIQERMSLSSILSS
           G WK I K+ N   + NI  KVG G    FW D W G   L   F  L+ L + + A++ E+WD +     WN+ F  + ND E+     L  +L +
Subjt:  SSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELWDDN--TKAWNMHFRMNLNDDEIQERMSLSSILSS

Query:  FFATKRSDRWVW
        F  + + D  +W
Subjt:  FFATKRSDRWVW

TrEMBL top hitse value%identityAlignment
A0A0V0J1N2 Putative ovule protein5.3e-3139.15Show/hide
Query:  LSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVK-HFDLKPDDKSL
        +SLF +P  +   ++ L R FLW GNKE  S HL++W+ + L + + GLGI  L L N   L KW+WRF I  Q+LW+RVI  K+G++ H+  +    + 
Subjt:  LSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVK-HFDLKPDDKSL

Query:  NSSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELWDDNTKAWNMHFRMNLNDDEIQERMSLSSILSSF
          S   WK+I ++       NI  KVGNG+   FW + WIG   L S F  L+ LT +  A+I++LW  + + WN+ FR  LND EI+  ++L  IL++F
Subjt:  NSSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELWDDNTKAWNMHFRMNLNDDEIQERMSLSSILSSF

Query:  FATK-RSDRWVW
          T    D+ +W
Subjt:  FATK-RSDRWVW

A0A438EPT1 Putative ribonuclease H protein6.9e-3136.32Show/hide
Query:  LSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSLN
        LSLF +P  V+  LE L R FLW G   +  +HL+ WE V   + + GLGI  + L N   L KW+WRF   K  LW++VI+ KFG +  D + ++    
Subjt:  LSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSLN

Query:  SSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELWDDN--TKAWNMHFRMNLNDDEIQERMSLSSILSS
           G WK I K+ +   + NI  KVG G    FW D W G + L   F LL++L   + A++ E+WD +    +WN+ F  + ND E+    SL S+L  
Subjt:  SSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELWDDN--TKAWNMHFRMNLNDDEIQERMSLSSILSS

Query:  FFATKRSDRWVW
        +  +   D   W
Subjt:  FFATKRSDRWVW

A0A438F797 Transposon TX1 uncharacterized 149 kDa protein5.3e-3135.98Show/hide
Query:  YLSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSL
        ++SLF +P KV   LE + R+FLW   +E+  IHL+RWE +   +   GLG+  LK +N A L KW+WRF I +++ WRRVI+ KFG         +   
Subjt:  YLSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSL

Query:  NSSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELW---DDNTKAWNMHFRMNLNDDEIQERMSLSSIL
        +   G WK I K   +  +  I   +GNG+ T FW D+W+G S L   F LL+++     A +A+LW   +     W +HFR    D E++E       +
Subjt:  NSSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELW---DDNTKAWNMHFRMNLNDDEIQERMSLSSIL

Query:  SSFFATKRSDRWVW
        S+    +R D  VW
Subjt:  SSFFATKRSDRWVW

A0A438H4W9 Putative ribonuclease H protein2.0e-3036.79Show/hide
Query:  LSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSLN
        LSLF +P  V+  LE L R FLW G   +  IHL+ WE V   + + GLGI  + L N A L KWIWRF   K+ LW++VI  K+G + F  + ++    
Subjt:  LSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSLN

Query:  SSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELWDDN--TKAWNMHFRMNLNDDEIQERMSLSSILSS
           G WK I K+ N   + NI  KVG G    FW D W G   L   F  L+ L + + A++ E+WD +     WN+ F  + ND E+     L  +L +
Subjt:  SSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELWDDN--TKAWNMHFRMNLNDDEIQERMSLSSILSS

Query:  FFATKRSDRWVW
        F  + + D  +W
Subjt:  FFATKRSDRWVW

M1B510 Reverse transcriptase domain-containing protein1.2e-3036.79Show/hide
Query:  YLSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSL
        ++SL  +P+KV   L+ + R FLW  N +   IHL++W KV LP+   GLGI DL L N   L KW WR++     LW+ VI AK+G        +  S 
Subjt:  YLSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSL

Query:  NSSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELWDDNTKAWNMHFRMNLNDDEIQERMSL-SSILSS
        +   G W+ I K   +  +++    VGNG+   FW D+W+G +PLM+AF  ++Q+     ++I +  +DN   WN+  R NLND E++E  SL ++I +S
Subjt:  NSSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELWDDNTKAWNMHFRMNLNDDEIQERMSL-SSILSS

Query:  FFATKRSDRWVW
           ++R D+ +W
Subjt:  FFATKRSDRWVW

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657502.8e-1332.43Show/hide
Query:  LSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSL-
        +S   LP  +   L+ L R FLW    EK   HL++W KV  P+ E GLG+   K  N A ++K  WR    K +LW  V+  K+   H     D + L 
Subjt:  LSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSL-

Query:  --NSSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLM
           S    W+SI       +   +    G+GQ   FW D W+   PL+
Subjt:  --NSSEGPWKSIYKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLM

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TACCTCTCCCTTTTCCACCTTCCTTCTAAAGTATCTGCCTCCCTTGAAAGTTTGTTTCGGAAATTTCTTTGGGTGGGGAACAAGGAGAAAGATAGCATCCATCTCCTCAG
ATGGGAAAAAGTAAAGTTGCCACAACATGAGGAAGGTCTCGGCATTATTGACTTGAAGCTATGGAACACGGCCTTCTTAGCCAAATGGATTTGGCGGTTTCATATTGGGA
AACAGGCTCTTTGGAGAAGGGTTATTCTTGCAAAATTCGGGGTCAAACATTTTGATTTAAAGCCAGATGATAAGTCATTAAATTCCTCCGAAGGCCCTTGGAAGTCTATT
TACAAACAAACTAACAAGGCTATCTACACCAACATTTACTGCAAAGTTGGAAATGGACAGTTTACCCTCTTTTGGTTAGATCTCTGGATTGGTACAAGCCCACTGATGAG
TGCTTTCCATCTATTGTATCAATTGACTCTGAAAAAACTAGCTTCTATTGCAGAATTATGGGACGACAACACTAAGGCATGGAATATGCACTTCCGAATGAATCTCAATG
ATGATGAAATACAGGAACGGATGTCTTTATCCTCCATATTATCATCCTTTTTTGCCACAAAAAGAAGCGACCGTTGGGTTTGG
mRNA sequenceShow/hide mRNA sequence
TACCTCTCCCTTTTCCACCTTCCTTCTAAAGTATCTGCCTCCCTTGAAAGTTTGTTTCGGAAATTTCTTTGGGTGGGGAACAAGGAGAAAGATAGCATCCATCTCCTCAG
ATGGGAAAAAGTAAAGTTGCCACAACATGAGGAAGGTCTCGGCATTATTGACTTGAAGCTATGGAACACGGCCTTCTTAGCCAAATGGATTTGGCGGTTTCATATTGGGA
AACAGGCTCTTTGGAGAAGGGTTATTCTTGCAAAATTCGGGGTCAAACATTTTGATTTAAAGCCAGATGATAAGTCATTAAATTCCTCCGAAGGCCCTTGGAAGTCTATT
TACAAACAAACTAACAAGGCTATCTACACCAACATTTACTGCAAAGTTGGAAATGGACAGTTTACCCTCTTTTGGTTAGATCTCTGGATTGGTACAAGCCCACTGATGAG
TGCTTTCCATCTATTGTATCAATTGACTCTGAAAAAACTAGCTTCTATTGCAGAATTATGGGACGACAACACTAAGGCATGGAATATGCACTTCCGAATGAATCTCAATG
ATGATGAAATACAGGAACGGATGTCTTTATCCTCCATATTATCATCCTTTTTTGCCACAAAAAGAAGCGACCGTTGGGTTTGG
Protein sequenceShow/hide protein sequence
YLSLFHLPSKVSASLESLFRKFLWVGNKEKDSIHLLRWEKVKLPQHEEGLGIIDLKLWNTAFLAKWIWRFHIGKQALWRRVILAKFGVKHFDLKPDDKSLNSSEGPWKSI
YKQTNKAIYTNIYCKVGNGQFTLFWLDLWIGTSPLMSAFHLLYQLTLKKLASIAELWDDNTKAWNMHFRMNLNDDEIQERMSLSSILSSFFATKRSDRWVW