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MS011963 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011963
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold123_2:32056..32310
RNA-Seq ExpressionMS011963
SyntenyMS011963
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.2e-2362.34Show/hide
Query:  LGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGMIGHLAKTC
        LGNAIG+ EDV+ + +  CWG  LRV+VRFD+ KPL RG+K N+DGPMGGCW+PI+YERL DF Y CG + H+ K C
Subjt:  LGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGMIGHLAKTC

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]2.8e-2567.09Show/hide
Query:  LGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGMIGHLAKTCDS
        LGNAIG   DVDC+     WG SLR++V  DITKPLRRG+K NIDGPMGGCW+PI+YERL DFCY CG+IGH +  CD+
Subjt:  LGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGMIGHLAKTCDS

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]6.6e-1962.32Show/hide
Query:  LGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGM
        LGNA+G  E+ DCD     WG +LRV+V  DI+KPLRRG+K N+DGP+GG W+PI+YERL DFCY CG+
Subjt:  LGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGM

XP_035547259.1 uncharacterized protein LOC118348856 [Juglans regia]2.0e-1546.91Show/hide
Query:  LLGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGMIGHLAKTCDSN
        L+GN IG+ E+VD +  E  WGE LR++VR +I++PL RG+   + G  G  W+   YERL +FCY CG +GH  K C+ N
Subjt:  LLGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGMIGHLAKTCDSN

XP_042958115.1 uncharacterized protein LOC122293643 [Carya illinoinensis]5.2e-1650Show/hide
Query:  VSLLGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGMIGHLAKTC
        VS +GN+IGV E++D + DE  WGE +++++  D+TKPL RG   N+ G  G CWV   YERL  FCY CG +GH  K C
Subjt:  VSLLGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGMIGHLAKTC

TrEMBL top hitse value%identityAlignment
A0A6J1BSZ1 uncharacterized protein LOC1110054815.6e-2462.34Show/hide
Query:  LGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGMIGHLAKTC
        LGNAIG+ EDV+ + +  CWG  LRV+VRFD+ KPL RG+K N+DGPMGGCW+PI+YERL DF Y CG + H+ K C
Subjt:  LGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGMIGHLAKTC

A0A6J1DU55 uncharacterized protein LOC1110231351.3e-2567.09Show/hide
Query:  LGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGMIGHLAKTCDS
        LGNAIG   DVDC+     WG SLR++V  DITKPLRRG+K NIDGPMGGCW+PI+YERL DFCY CG+IGH +  CD+
Subjt:  LGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGMIGHLAKTCDS

A0A6J1DX30 uncharacterized protein LOC1110248743.2e-1962.32Show/hide
Query:  LGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGM
        LGNA+G  E+ DCD     WG +LRV+V  DI+KPLRRG+K N+DGP+GG W+PI+YERL DFCY CG+
Subjt:  LGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGM

A0A6P9EID8 uncharacterized protein LOC1183488569.6e-1646.91Show/hide
Query:  LLGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGMIGHLAKTCDSN
        L+GN IG+ E+VD +  E  WGE LR++VR +I++PL RG+   + G  G  W+   YERL +FCY CG +GH  K C+ N
Subjt:  LLGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGMIGHLAKTCDSN

A0A803NE16 Uncharacterized protein3.6e-1553.75Show/hide
Query:  LGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGC--WVPIKYERLLDFCYCCGMIGHLAKTCD
        +GN IG C DVD + D  CW E +RVKV  +I KPLRRG+K  ++    GC  W+  KYERL DFCY CG IGH  K C+
Subjt:  LGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGC--WVPIKYERLLDFCYCCGMIGHLAKTCD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01050.1 zinc ion binding;nucleic acid binding3.7e-0434.43Show/hide
Query:  GESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGMIGHLAKTCDSNV
        G   RV +  ++ KPL+  V  N D         + YE L   C  CG+ GHL  +C  NV
Subjt:  GESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGMIGHLAKTCDSNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTTCTCTTCTCGGCAATGCAATTGGGGTTTGTGAGGATGTTGACTGTGATCTTGATGAGTGCTGTTGGGGGGAAAGTTTGAGGGTCAAAGTGAGATTTGACATAACAAA
ACCCTTGAGACGAGGTGTGAAGACCAATATTGATGGTCCTATGGGTGGATGTTGGGTTCCAATCAAGTATGAGCGTTTACTAGACTTTTGTTATTGTTGTGGGATGATTG
GCCATCTAGCTAAAACTTGTGATTCAAATGTTGAT
mRNA sequenceShow/hide mRNA sequence
GTTTCTCTTCTCGGCAATGCAATTGGGGTTTGTGAGGATGTTGACTGTGATCTTGATGAGTGCTGTTGGGGGGAAAGTTTGAGGGTCAAAGTGAGATTTGACATAACAAA
ACCCTTGAGACGAGGTGTGAAGACCAATATTGATGGTCCTATGGGTGGATGTTGGGTTCCAATCAAGTATGAGCGTTTACTAGACTTTTGTTATTGTTGTGGGATGATTG
GCCATCTAGCTAAAACTTGTGATTCAAATGTTGAT
Protein sequenceShow/hide protein sequence
VSLLGNAIGVCEDVDCDLDECCWGESLRVKVRFDITKPLRRGVKTNIDGPMGGCWVPIKYERLLDFCYCCGMIGHLAKTCDSNVD