CuGenDBv2

Gene ID	MS011967
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L2, chloroplastic
Genome location	scaffold123_2:48833..49102
RNA-Seq Expression	MS011967
Synteny	MS011967
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0009507 - chloroplast (cellular component) GO:0015934 - large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0016740 - transferase activity (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR002171 - Ribosomal protein L2 IPR012340 - Nucleic acid-binding, OB-fold IPR022666 - Ribosomal Proteins L2, RNA binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

QGW14145.1 ribosomal protein L2 [Acer tataricum subsp. ginnala]

9.0e-43

94.44

Show/hide

Query:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC
        M+IHLYKTSTPSTRNGAVDSQVKSNP+NNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRN ++C
Subjt:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC

QGX42562.1 ribosomal protein L2 [Toxicodendron vernicifluum]

9.0e-43

94.44

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Query:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC
        M+IHLYKTSTPSTRNGAVDSQVKSNP+NNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRN ++C
Subjt:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC

QWY87477.1 ribosomal protein L2 [Pterocarpus soyauxii]

9.0e-43

94.44

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Query:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC
        M+IHLYKTSTPSTRNGAVDSQVKSNP+NNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRN ++C
Subjt:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC

YP_009456102.1 ribosomal protein L2 [Momordica charantia]

4.0e-43

95.56

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Query:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC
        MSIHLYKTSTPSTRNGAVDSQVKSNP+NNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRN ++C
Subjt:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC

YP_009715670.1 ribosomal protein L2 [Schotia brachypetala]

9.0e-43

94.44

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Query:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC
        M+IHLYKTSTPSTRNGAVDSQVKSNP+NNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRN ++C
Subjt:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC

TrEMBL top hits

e value

%identity

Alignment

A0A159BNZ5 50S ribosomal protein L2, chloroplastic

4.4e-43

94.44

Show/hide

Query:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC
        M+IHLYKTSTPSTRNGAVDSQVKSNP+NNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRN ++C
Subjt:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC

A0A2I6C042 50S ribosomal protein L2, chloroplastic

2.0e-43

95.56

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Query:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC
        MSIHLYKTSTPSTRNGAVDSQVKSNP+NNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRN ++C
Subjt:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC

A0A649Z9S0 50S ribosomal protein L2, chloroplastic

4.4e-43

94.44

Show/hide

Query:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC
        M+IHLYKTSTPSTRNGAVDSQVKSNP+NNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRN ++C
Subjt:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC

A0A650B2I6 50S ribosomal protein L2, chloroplastic

4.4e-43

94.44

Show/hide

Query:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC
        M+IHLYKTSTPSTRNGAVDSQVKSNP+NNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRN ++C
Subjt:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC

A0A6B9R3D3 50S ribosomal protein L2, chloroplastic

4.4e-43

94.44

Show/hide

Query:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC
        M+IHLYKTSTPSTRNGAVDSQVKSNP+NNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRN ++C
Subjt:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC

SwissProt top hits

e value

%identity

Alignment

A9L9D7 50S ribosomal protein L2, chloroplastic

1.3e-44

92.22

Show/hide

Query:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC
        M+IHLYKTSTPSTRNGAVD +VKSNP+NNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRN ++C
Subjt:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC

Q09MB2 50S ribosomal protein L2, chloroplastic

1.2e-45

94.44

Show/hide

Query:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC
        M+IHLYKTSTPSTRNGAVDSQVKSNP+NNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRN ++C
Subjt:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC

Q0ZIX7 50S ribosomal protein L2, chloroplastic

1.0e-44

93.33

Show/hide

Query:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC
        M+IHLYKTSTPSTRN AVDSQVKSNP+NNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRN ++C
Subjt:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC

Q332R5 50S ribosomal protein L2, chloroplastic

1.3e-44

92.22

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Query:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC
        M+IHLYKTSTPSTRNGAVDS+VKSNP+NNLIYGQH CGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRN ++C
Subjt:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC

Q4VZK5 50S ribosomal protein L2, chloroplastic

1.2e-45

94.44

Show/hide

Query:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC
        M+IHLYKTSTPSTRNGAVDSQVKSNP+NNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRN ++C
Subjt:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC

Arabidopsis top hits

e value

%identity

Alignment

AT2G07715.1 Nucleic acid-binding, OB-fold-like protein

2.2e-07

54.17

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Query:  GRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNT
        GRN+ G IT  HRGGG KRL R+ID +R+   + G + +IEYDPNR++
Subjt:  GRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNT

ATCG00830.1 ribosomal protein L2

1.5e-43

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Query:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC
        M+IHLYKTSTPSTRNGAVDSQVKSNP+NNLI GQH CGKGRNARGIITA HRGGGHKRLYRKIDFRRN KDIYGRIVTIEYDPNRN ++C
Subjt:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC

ATCG01310.1 ribosomal protein L2

1.5e-43

Show/hide

Query:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC
        M+IHLYKTSTPSTRNGAVDSQVKSNP+NNLI GQH CGKGRNARGIITA HRGGGHKRLYRKIDFRRN KDIYGRIVTIEYDPNRN ++C
Subjt:  MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC

ATMG00560.1 Nucleic acid-binding, OB-fold-like protein

2.2e-07

54.17

Show/hide

Query:  GRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNT
        GRN+ G IT  HRGGG KRL R+ID +R+   + G + +IEYDPNR++
Subjt:  GRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNT

Sequences

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CDS sequence

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ATGTCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACAAAATAATTTGATCTATGGACAGCATCGTTG
TGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATG
GTAGAATCGTAACCATAGAATACGACCCTAATCGAAACACATTTGTTTGC

mRNA sequence

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Protein sequence

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MSIHLYKTSTPSTRNGAVDSQVKSNPQNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNTFVC

MS011967 (gene) of Bitter gourd (TR) v1 genome