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MS011968 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011968
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionphotosynthetic NDH subunit of subcomplex B 1, chloroplastic
Genome locationscaffold123_2:59039..59338
RNA-Seq ExpressionMS011968
SyntenyMS011968
Gene Ontology termsGO:0009773 - photosynthetic electron transport in photosystem I (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0010598 - NAD(P)H dehydrogenase complex (plastoquinone) (cellular component)
InterPro domainsIPR044983 - Photosynthetic NDH subunit of subcomplex B 1, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575629.1 Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.4e-2569.9Show/hide
Query:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG
        PY FLKF +GY+VE  SLG KLRGDVRRC  VISG VY NLLFF A+QLLKD Y  VQIDVV S  GK TY +NKNVR S V DP+DYFP+P  Y DM G
Subjt:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG

Query:  LLK
        LLK
Subjt:  LLK
XP_022145001.1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Momordica charantia]1.4e-2569.9Show/hide
Query:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG
        PY FLKF +GY+VE  SLG KLRGDVRRC  VISG VY NLLFF A+QLLKD Y  VQIDVV S  GK TY +NKNVR S V DP+DYFP+P  Y DM G
Subjt:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG

Query:  LLK
        LLK
Subjt:  LLK
XP_022953552.1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita moschata]1.4e-2569.9Show/hide
Query:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG
        PY FLKF +GY+VE  SLG KLRGDVRRC  VISG VY NLLFF A+QLLKD Y  VQIDVV S  GK TY +NKNVR S V DP+DYFP+P  Y DM G
Subjt:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG

Query:  LLK
        LLK
Subjt:  LLK
XP_023548446.1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita pepo subsp. pepo]1.4e-2569.9Show/hide
Query:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG
        PY FLKF +GY+VE  SLG KLRGDVRRC  VISG VY NLLFF A+QLLKD Y  VQIDVV S  GK TY +NKNVR S V DP+DYFP+P  Y DM G
Subjt:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG

Query:  LLK
        LLK
Subjt:  LLK
XP_038896546.1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Benincasa hispida]3.2e-2568.93Show/hide
Query:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG
        PY FLKF +GY+VE  SLG KLRGDVRRC  V+SG VY NLLFF A+QLLKD Y  VQIDVV S  GK TY +NKNVR S V DP+DYFP+P  Y DM G
Subjt:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG

Query:  LLK
        LLK
Subjt:  LLK
TrEMBL top hitse value%identityAlignment
A0A1S3CEK1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic1.6e-2568.93Show/hide
Query:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG
        PY FLKF +GY+VE  SLG KLRGDVRRC  VISG VY NLLFF A+QLLKD Y  VQIDVV S  GK TY +NKNVR S V DP+DYFP+P  Y DM G
Subjt:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG

Query:  LLK
        +LK
Subjt:  LLK
A0A5A7UYW0 Photosynthetic NDH subunit of subcomplex B 11.6e-2568.93Show/hide
Query:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG
        PY FLKF +GY+VE  SLG KLRGDVRRC  VISG VY NLLFF A+QLLKD Y  VQIDVV S  GK TY +NKNVR S V DP+DYFP+P  Y DM G
Subjt:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG

Query:  LLK
        +LK
Subjt:  LLK
A0A6J1CV27 photosynthetic NDH subunit of subcomplex B 1, chloroplastic7.0e-2669.9Show/hide
Query:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG
        PY FLKF +GY+VE  SLG KLRGDVRRC  VISG VY NLLFF A+QLLKD Y  VQIDVV S  GK TY +NKNVR S V DP+DYFP+P  Y DM G
Subjt:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG

Query:  LLK
        LLK
Subjt:  LLK
A0A6J1GNJ2 photosynthetic NDH subunit of subcomplex B 1, chloroplastic7.0e-2669.9Show/hide
Query:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG
        PY FLKF +GY+VE  SLG KLRGDVRRC  VISG VY NLLFF A+QLLKD Y  VQIDVV S  GK TY +NKNVR S V DP+DYFP+P  Y DM G
Subjt:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG

Query:  LLK
        LLK
Subjt:  LLK
A0A6J1JXN2 photosynthetic NDH subunit of subcomplex B 1, chloroplastic2.0e-2568.93Show/hide
Query:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG
        PY FLKF +GY+VE  SLG KLRGDVRRC  VISG VY NLLFF  +QLLKD Y  VQIDVV S  GK TY +NKNVR S V DP+DYFP+P  Y DM G
Subjt:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG

Query:  LLK
        LLK
Subjt:  LLK
SwissProt top hitse value%identityAlignment
Q9S9N6 Photosynthetic NDH subunit of subcomplex B 1, chloroplastic2.2e-2460.19Show/hide
Query:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG
        PY FLKF KGY VE  SL  K+RGDVRRC  VISG VY NLLFF  +QL+KD Y  VQ+D++ +  GK TY +NKNVR + V DP+D++P+P  Y DM G
Subjt:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG

Query:  LLK
        LLK
Subjt:  LLK
Arabidopsis top hitse value%identityAlignment
AT1G15980.1 NDH-dependent cyclic electron flow 11.5e-2560.19Show/hide
Query:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG
        PY FLKF KGY VE  SL  K+RGDVRRC  VISG VY NLLFF  +QL+KD Y  VQ+D++ +  GK TY +NKNVR + V DP+D++P+P  Y DM G
Subjt:  PYEFLKFLKGYVVENTSLG-KLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVS-HGK-TYAVNKNVRRSKVNDPNDYFPKPT-YIDMGG

Query:  LLK
        LLK
Subjt:  LLK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCCTATGAGTTTTTGAAATTTCTTAAGGGGTACGTGGTGGAGAACACTTCTCTAGGTAAACTCCGAGGAGATGTCCGACGATGCTATTATGTTATATCCGGCGACGTCTA
CGGGAACCTCCTCTTCTTTTCGGCCATGCAATTGCTCAAGGATTGGTACTCGAGAGTTCAAATCGACGTGGTGGTTTCGCATGGGAAAACTTATGCAGTGAACAAAAATG
TGAGACGGTCAAAAGTCAATGATCCGAATGATTATTTTCCTAAACCAACATACATTGACATGGGTGGATTGCTCAAG
mRNA sequenceShow/hide mRNA sequence
CCCTATGAGTTTTTGAAATTTCTTAAGGGGTACGTGGTGGAGAACACTTCTCTAGGTAAACTCCGAGGAGATGTCCGACGATGCTATTATGTTATATCCGGCGACGTCTA
CGGGAACCTCCTCTTCTTTTCGGCCATGCAATTGCTCAAGGATTGGTACTCGAGAGTTCAAATCGACGTGGTGGTTTCGCATGGGAAAACTTATGCAGTGAACAAAAATG
TGAGACGGTCAAAAGTCAATGATCCGAATGATTATTTTCCTAAACCAACATACATTGACATGGGTGGATTGCTCAAG
Protein sequenceShow/hide protein sequence
PYEFLKFLKGYVVENTSLGKLRGDVRRCYYVISGDVYGNLLFFSAMQLLKDWYSRVQIDVVVSHGKTYAVNKNVRRSKVNDPNDYFPKPTYIDMGGLLK