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MS011973 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011973
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold123_2:109958..110230
RNA-Seq ExpressionMS011973
SyntenyMS011973
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015382889.1 uncharacterized protein LOC102626150 [Citrus sinensis]1.2e-1852.17Show/hide
Query:  WVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRL--EAAWDVWCPIKYERLPDFCYRCGCLGH
        WVQIH+VP  C++KEMA +LGA +GKVE VD     E +G FLRLRI++DI K +++ I++    E A D+   + YERLPDFC+ CG +GH
Subjt:  WVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRL--EAAWDVWCPIKYERLPDFCYRCGCLGH

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]2.0e-2652.75Show/hide
Query:  FWVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEAAWDVWCPIKYERLPDFCYRCGCLGH
        FW+QIHN+PF+C++ EMA  LGA LG VE ++ +G + W G F+R+R+ +D+ K +RRGIK++     D+WCP++YE+LPDFCY CG +GH
Subjt:  FWVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEAAWDVWCPIKYERLPDFCYRCGCLGH

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]2.3e-2553.85Show/hide
Query:  FWVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEAAWDVWCPIKYERLPDFCYRCGCLGH
        FWVQIH + F+C+TK+MA  LGA LG+VE VD   + +WV  FL +R+ ++++K +RRG+K++     D+WCP++YERLPDFCY CGC+GH
Subjt:  FWVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEAAWDVWCPIKYERLPDFCYRCGCLGH

XP_024953751.1 uncharacterized protein LOC112498094 [Citrus sinensis]5.9e-1848.39Show/hide
Query:  FWVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLE--AAWDVWCPIKYERLPDFCYRCGCLGH
        FWVQIH+VP  C+TKEM   LG ++GKVE V+ +   E  G FLRLRI++DI + +++ +++  E  A  D+   + YERLPDFC+ CG +GH
Subjt:  FWVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLE--AAWDVWCPIKYERLPDFCYRCGCLGH

XP_030930480.1 uncharacterized protein LOC115956164 [Quercus lobata]1.2e-1848.35Show/hide
Query:  FWVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEAAWDVWCPIKYERLPDFCYRCGCLGH
        FW+QIH +P  C TK +   +GA+LG+VE VD  G+   +G+FLR+R+ +DI K + RG K+RL      W   KYERLP FCY CG + H
Subjt:  FWVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEAAWDVWCPIKYERLPDFCYRCGCLGH

TrEMBL top hitse value%identityAlignment
A0A1S8AC25 CCHC-type domain-containing protein (Fragment)1.7e-1849.46Show/hide
Query:  FWVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEA--AWDVWCPIKYERLPDFCYRCGCLGH
        FWVQIH+VP  C++K+MA +LG  +GKVE V+ +   E  G FLRLRI++DI K +++ I++  E   A D+   + YERLPDFC+ CG +GH
Subjt:  FWVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEA--AWDVWCPIKYERLPDFCYRCGCLGH

A0A6J1D765 uncharacterized protein LOC1110179029.9e-2752.75Show/hide
Query:  FWVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEAAWDVWCPIKYERLPDFCYRCGCLGH
        FW+QIHN+PF+C++ EMA  LGA LG VE ++ +G + W G F+R+R+ +D+ K +RRGIK++     D+WCP++YE+LPDFCY CG +GH
Subjt:  FWVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEAAWDVWCPIKYERLPDFCYRCGCLGH

A0A6J1DP89 uncharacterized protein LOC1110229321.4e-1748.68Show/hide
Query:  WVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEAAWDVWCPIKYE
        W+QIH +PFQC+ K+MA  LG  +G+VE +DC G+ EW G F+R+R+ +DI K  +RG+K+R     + WCP++YE
Subjt:  WVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEAAWDVWCPIKYE

A0A6J1DVS4 uncharacterized protein LOC1110235551.1e-2553.85Show/hide
Query:  FWVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEAAWDVWCPIKYERLPDFCYRCGCLGH
        FWVQIH + F+C+TK+MA  LGA LG+VE VD   + +WV  FL +R+ ++++K +RRG+K++     D+WCP++YERLPDFCY CGC+GH
Subjt:  FWVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEAAWDVWCPIKYERLPDFCYRCGCLGH

A0A6J1DX30 uncharacterized protein LOC1110248741.9e-1748.28Show/hide
Query:  WVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEA-AWDVWCPIKYERLPDFCYRCG
        WV+  ++P  C+T++MA +LG +LG  E  DC+  N   G+ LR+R+ +DI K +RRGIK+ L+      W PI+YERLPDFCY CG
Subjt:  WVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEA-AWDVWCPIKYERLPDFCYRCG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G17920.1 nucleic acid binding;zinc ion binding5.9e-0828.24Show/hide
Query:  WVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEAAWDVWCPIKYERLPDFCYRC
        WVQ+  +PF  +++E A ++   +G + ++D   T     A++R+R+ + I  S+R   +I  E+        +YERL   C  C
Subjt:  WVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEAAWDVWCPIKYERLPDFCYRC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTGGGTCCAAATTCATAACGTTCCGTTTCAGTGTTTAACTAAGGAGATGGCTTTCAAACTAGGAGCTTCTTTGGGCAAGGTTGAAACGGTGGATTGCGAGGGGACTAA
TGAATGGGTTGGAGCTTTTCTACGCCTTCGGATTACTATGGATATTGTCAAGTCGATTCGTCGGGGAATTAAGATTCGGTTGGAGGCGGCATGGGACGTCTGGTGCCCCA
TCAAATATGAAAGGTTACCGGATTTTTGTTATCGGTGTGGGTGTTTGGGACAC
mRNA sequenceShow/hide mRNA sequence
TTTTGGGTCCAAATTCATAACGTTCCGTTTCAGTGTTTAACTAAGGAGATGGCTTTCAAACTAGGAGCTTCTTTGGGCAAGGTTGAAACGGTGGATTGCGAGGGGACTAA
TGAATGGGTTGGAGCTTTTCTACGCCTTCGGATTACTATGGATATTGTCAAGTCGATTCGTCGGGGAATTAAGATTCGGTTGGAGGCGGCATGGGACGTCTGGTGCCCCA
TCAAATATGAAAGGTTACCGGATTTTTGTTATCGGTGTGGGTGTTTGGGACAC
Protein sequenceShow/hide protein sequence
FWVQIHNVPFQCLTKEMAFKLGASLGKVETVDCEGTNEWVGAFLRLRITMDIVKSIRRGIKIRLEAAWDVWCPIKYERLPDFCYRCGCLGH