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MS011974 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011974
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING/U-box superfamily protein
Genome locationscaffold123_2:117385..117480
RNA-Seq ExpressionMS011974
SyntenyMS011974
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039247.1 putative E3 ubiquitin-protein ligase RNF217 isoform X2 [Cucumis melo var. makuwa]5.2e-0975Show/hide
Query:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG
        KRCPHC+IYVE I+GCP++IC+CG++FCYSCG
Subjt:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG

XP_004144476.2 probable E3 ubiquitin-protein ligase RNF144A [Cucumis sativus]2.0e-0875Show/hide
Query:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG
        +RCPHCKIYVE+  GC HI+C+CGS+FCYSCG
Subjt:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG

XP_008460341.1 PREDICTED: E3 ubiquitin-protein ligase RNF144B-like [Cucumis melo]1.2e-0878.12Show/hide
Query:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG
        +RCPHCKIYVE+  GC HI+C+CGSEFCYSCG
Subjt:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG

XP_022980686.1 probable E3 ubiquitin-protein ligase ARI5 [Cucurbita maxima]3.3e-0881.25Show/hide
Query:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG
        KRCPHCKI VE+I GC HI C+CGSEFCYSCG
Subjt:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG

XP_023527456.1 probable E3 ubiquitin-protein ligase rbrA [Cucurbita pepo subsp. pepo]1.2e-0881.25Show/hide
Query:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG
        KRCPHCKI VE+I+GC HI C+CGSEFCYSCG
Subjt:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG

TrEMBL top hitse value%identityAlignment
A0A0A0L952 Uncharacterized protein9.5e-0975Show/hide
Query:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG
        +RCPHCKIYVE+  GC HI+C+CGS+FCYSCG
Subjt:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG

A0A1S3CDI0 E3 ubiquitin-protein ligase RNF144B-like5.6e-0978.12Show/hide
Query:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG
        +RCPHCKIYVE+  GC HI+C+CGSEFCYSCG
Subjt:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG

A0A5A7TCD1 Putative E3 ubiquitin-protein ligase RNF217 isoform X22.5e-0975Show/hide
Query:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG
        KRCPHC+IYVE I+GCP++IC+CG++FCYSCG
Subjt:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG

A0A5A7UED3 E3 ubiquitin-protein ligase RNF144B-like protein5.6e-0978.12Show/hide
Query:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG
        +RCPHCKIYVE+  GC HI+C+CGSEFCYSCG
Subjt:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG

A0A6J1IU95 probable E3 ubiquitin-protein ligase ARI51.6e-0881.25Show/hide
Query:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG
        KRCPHCKI VE+I GC HI C+CGSEFCYSCG
Subjt:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG

SwissProt top hitse value%identityAlignment
A4IIY1 Probable E3 ubiquitin-protein ligase RNF144A1.0e-0453.12Show/hide
Query:  KRCPHCKIYVERIQGCPHIICK-CGSEFCYSC
        KRCP CK+Y+ER +GC  ++CK C   FC+ C
Subjt:  KRCPHCKIYVERIQGCPHIICK-CGSEFCYSC

P50876 E3 ubiquitin-protein ligase RNF144A1.0e-0453.12Show/hide
Query:  KRCPHCKIYVERIQGCPHIICK-CGSEFCYSC
        KRCP CK+Y+ER +GC  ++CK C   FC+ C
Subjt:  KRCPHCKIYVERIQGCPHIICK-CGSEFCYSC

Q5RFV4 Probable E3 ubiquitin-protein ligase RNF144A-A1.0e-0453.12Show/hide
Query:  KRCPHCKIYVERIQGCPHIICK-CGSEFCYSC
        KRCP CK+Y+ER +GC  ++CK C   FC+ C
Subjt:  KRCPHCKIYVERIQGCPHIICK-CGSEFCYSC

Q6DH94 Probable E3 ubiquitin-protein ligase RNF144A-B1.0e-0453.12Show/hide
Query:  KRCPHCKIYVERIQGCPHIICK-CGSEFCYSC
        KRCP CK+Y+ER +GC  ++CK C   FC+ C
Subjt:  KRCPHCKIYVERIQGCPHIICK-CGSEFCYSC

Q9US46 E3 ubiquitin-protein ligase itt12.1e-0556.25Show/hide
Query:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG
        +RCP C   VERI GC H+ C CG+ FC+ CG
Subjt:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG

Arabidopsis top hitse value%identityAlignment
AT2G26135.1 RING/U-box protein with C6HC-type zinc finger6.7e-0753.12Show/hide
Query:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG
        ++C  CK  +E  QGC  +IC+CG EFCY CG
Subjt:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG

AT3G14250.1 RING/U-box superfamily protein8.5e-1059.38Show/hide
Query:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG
        +RCP CK YV++++GC HI C+CG +FCY CG
Subjt:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG

AT3G53690.1 RING/U-box superfamily protein1.2e-0859.38Show/hide
Query:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG
        KRCP CK Y+E+ QGC ++ C+CG  FCY+CG
Subjt:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG

AT4G19670.1 RING/U-box superfamily protein1.6e-0859.38Show/hide
Query:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG
        +RC  C+I +E  QGC H+ C+CG EFCYSCG
Subjt:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG

AT4G19670.2 RING/U-box superfamily protein1.6e-0859.38Show/hide
Query:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG
        +RC  C+I +E  QGC H+ C+CG EFCYSCG
Subjt:  KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGAGATGTCCCCATTGCAAAATTTACGTGGAGAGGATTCAAGGTTGTCCCCATATCATATGTAAGTGTGGGTCTGAGTTTTGCTATAGCTGTGGA
mRNA sequenceShow/hide mRNA sequence
AAGAGATGTCCCCATTGCAAAATTTACGTGGAGAGGATTCAAGGTTGTCCCCATATCATATGTAAGTGTGGGTCTGAGTTTTGCTATAGCTGTGGA
Protein sequenceShow/hide protein sequence
KRCPHCKIYVERIQGCPHIICKCGSEFCYSCG