; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS011976 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011976
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING/U-box superfamily protein
Genome locationscaffold123_2:124364..124789
RNA-Seq ExpressionMS011976
SyntenyMS011976
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR002867 - IBR domain
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR017907 - Zinc finger, RING-type, conserved site
IPR018957 - Zinc finger, C3HC4 RING-type
IPR031127 - E3 ubiquitin ligase RBR family
IPR044066 - TRIAD supradomain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649011.1 hypothetical protein Csa_009107 [Cucumis sativus]1.3e-3540.98Show/hide
Query:  TMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEAM-------------------
        T C ICT  KA  +MF +  CSHS C DCISNH+ AKLEDN AN+KCP P CEAVL P+ C+SF+PK VL+ WG  LCEA                    
Subjt:  TMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEAM-------------------

Query:  -------TKE---------------------------------------------LAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCGGGWNSN
               TKE                                             LAE+ +WK+CPHC+ YVE  EGC +IIC C  +FCYSCG  W  +
Subjt:  -------TKE---------------------------------------------LAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCGGGWNSN

Query:  HACPQ
        HACP+
Subjt:  HACPQ

XP_022156852.1 probable E3 ubiquitin-protein ligase ARI8 [Momordica charantia]2.7e-7898.54Show/hide
Query:  MAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEAMTKELAERMSWKKCPHC
        MAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEA L PERCNSFLPKQVLECWGNALCEAMTKELAERMSWKKCPHC
Subjt:  MAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEAMTKELAERMSWKKCPHC

Query:  KIYVEKTEGCSHIICMCTFEFCYSCGGGWNSNHACPQ
        KIYVEKTEGCSHIICMCTFEFCYSCGGGWNSNHACPQ
Subjt:  KIYVEKTEGCSHIICMCTFEFCYSCGGGWNSNHACPQ

XP_022956145.1 probable E3 ubiquitin-protein ligase ARI10 [Cucurbita moschata]2.3e-3741.83Show/hide
Query:  PSSIMAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEA-------------
        P S  + T+CTICT TK+A++MF S GCSH+ C DCIS H+ AKLED+ A +KCP P C AVL PE C+SF+PK+VLE WG+AL +A             
Subjt:  PSSIMAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEA-------------

Query:  -------------------------------------------------------MTKELAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCGGG
                                                               MT +LA+   WK+CPHCKI VEK EGC HI C C  EFCY CG  
Subjt:  -------------------------------------------------------MTKELAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCGGG

Query:  WNSNHACP
        WN +HACP
Subjt:  WNSNHACP

XP_022980686.1 probable E3 ubiquitin-protein ligase ARI5 [Cucurbita maxima]1.8e-3742.31Show/hide
Query:  PSSIMAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEA-------------
        P S  +KT+CTICT TK+A++MF S GCSH+ C DCIS H+ AKL D+ A +KCP P C AVL PE C+SF+PK+VLE WG+AL +A             
Subjt:  PSSIMAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEA-------------

Query:  -------------------------------------------------------MTKELAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCGGG
                                                               MT +LA+   WK+CPHCKI VEK  GC HI C C  EFCYSCGG 
Subjt:  -------------------------------------------------------MTKELAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCGGG

Query:  WNSNHACP
        WN  HACP
Subjt:  WNSNHACP

XP_023527456.1 probable E3 ubiquitin-protein ligase rbrA [Cucurbita pepo subsp. pepo]4.7e-3841.83Show/hide
Query:  PSSIMAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALC---------------
        P S  ++T+CTICT TK+A++MF S GCSH+ C DCIS H+ A+LED+ A +KCP P C AVL PE C+SF+PK+VLE WG+AL                
Subjt:  PSSIMAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALC---------------

Query:  -----------------------------------------------------EAMTKELAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCGGG
                                                             E MT +LA+   WK+CPHCKI VEK EGC HI C C  EFCYSCG  
Subjt:  -----------------------------------------------------EAMTKELAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCGGG

Query:  WNSNHACP
        WN +HACP
Subjt:  WNSNHACP

TrEMBL top hitse value%identityAlignment
A0A0A0KSV5 Uncharacterized protein6.2e-3640.98Show/hide
Query:  TMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEAM-------------------
        T C ICT  KA  +MF +  CSHS C DCISNH+ AKLEDN AN+KCP P CEAVL P+ C+SF+PK VL+ WG  LCEA                    
Subjt:  TMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEAM-------------------

Query:  -------TKE---------------------------------------------LAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCGGGWNSN
               TKE                                             LAE+ +WK+CPHC+ YVE  EGC +IIC C  +FCYSCG  W  +
Subjt:  -------TKE---------------------------------------------LAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCGGGWNSN

Query:  HACPQ
        HACP+
Subjt:  HACPQ

A0A5A7TCD1 Putative E3 ubiquitin-protein ligase RNF217 isoform X25.8e-3436.76Show/hide
Query:  TMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEA--------------------
        T C ICT  KA+ +MF +  CSHS C DCIS+H+ AKLEDN AN+KCP   C+A+L P+ C+SF+PK + + WG+ LCEA                    
Subjt:  TMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEA--------------------

Query:  --------------------------------------------------MTKELAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCGGGWNSNH
                                                          +  +LAE+ +WK+CPHC+IYVE  EGC ++IC C  +FCYSCG  W   H
Subjt:  --------------------------------------------------MTKELAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCGGGWNSNH

Query:  ACPQ
        ACP+
Subjt:  ACPQ

A0A6J1DT24 probable E3 ubiquitin-protein ligase ARI81.3e-7898.54Show/hide
Query:  MAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEAMTKELAERMSWKKCPHC
        MAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEA L PERCNSFLPKQVLECWGNALCEAMTKELAERMSWKKCPHC
Subjt:  MAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEAMTKELAERMSWKKCPHC

Query:  KIYVEKTEGCSHIICMCTFEFCYSCGGGWNSNHACPQ
        KIYVEKTEGCSHIICMCTFEFCYSCGGGWNSNHACPQ
Subjt:  KIYVEKTEGCSHIICMCTFEFCYSCGGGWNSNHACPQ

A0A6J1GX07 probable E3 ubiquitin-protein ligase ARI101.1e-3741.83Show/hide
Query:  PSSIMAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEA-------------
        P S  + T+CTICT TK+A++MF S GCSH+ C DCIS H+ AKLED+ A +KCP P C AVL PE C+SF+PK+VLE WG+AL +A             
Subjt:  PSSIMAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEA-------------

Query:  -------------------------------------------------------MTKELAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCGGG
                                                               MT +LA+   WK+CPHCKI VEK EGC HI C C  EFCY CG  
Subjt:  -------------------------------------------------------MTKELAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCGGG

Query:  WNSNHACP
        WN +HACP
Subjt:  WNSNHACP

A0A6J1IU95 probable E3 ubiquitin-protein ligase ARI58.7e-3842.31Show/hide
Query:  PSSIMAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEA-------------
        P S  +KT+CTICT TK+A++MF S GCSH+ C DCIS H+ AKL D+ A +KCP P C AVL PE C+SF+PK+VLE WG+AL +A             
Subjt:  PSSIMAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEA-------------

Query:  -------------------------------------------------------MTKELAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCGGG
                                                               MT +LA+   WK+CPHCKI VEK  GC HI C C  EFCYSCGG 
Subjt:  -------------------------------------------------------MTKELAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCGGG

Query:  WNSNHACP
        WN  HACP
Subjt:  WNSNHACP

SwissProt top hitse value%identityAlignment
D3YYI7 Probable E3 ubiquitin-protein ligase RNF2175.0e-0635Show/hide
Query:  KCPAPYCEAVLVPERCNSFLP-KQVLECWGNALCEAMTKELAERMSWKKCPHCKIYVEKTEGCSHIIC-MCTFEFCYSCG
        KC +P+ E V     C  +    ++L  W + +      E  +R + +KCP CKI++++TEGC H+ C  C   FCY CG
Subjt:  KCPAPYCEAVLVPERCNSFLP-KQVLECWGNALCEAMTKELAERMSWKKCPHCKIYVEKTEGCSHIIC-MCTFEFCYSCG

P36113 E3 ubiquitin-protein ligase HEL14.2e-0540.43Show/hide
Query:  AERMSW-----KKCPHCKIYVEKTEGCSHIIC-MCTFEFCYSCGGGW
        +E ++W     K+CP C + +EK  GC+H++C  C +EFC+ C G W
Subjt:  AERMSW-----KKCPHCKIYVEKTEGCSHIIC-MCTFEFCYSCGGGW

Q4KLT0 Probable E3 ubiquitin-protein ligase RNF2171.3e-0635Show/hide
Query:  KCPAPYCEAVLVPERCNSFLP-KQVLECWGNALCEAMTKELAERMSWKKCPHCKIYVEKTEGCSHIIC-MCTFEFCYSCG
        +C AP+ E V     C  +    ++L  W N +      E  +R + +KCP CK+++++TEGC H+ C  C   FCY CG
Subjt:  KCPAPYCEAVLVPERCNSFLP-KQVLECWGNALCEAMTKELAERMSWKKCPHCKIYVEKTEGCSHIIC-MCTFEFCYSCG

Q6T486 Probable E3 ubiquitin-protein ligase rbrA7.7e-0729.51Show/hide
Query:  GCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEAMTK--ELAERMSW-----KKCPHCKIYVEKTEGCSHIIC
        GC +S+  D        K    A N KC   YC        CN +     + C  + + + + K  + +E ++W     KKCP C+  +EK  GC H+ C
Subjt:  GCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEAMTK--ELAERMSW-----KKCPHCKIYVEKTEGCSHIIC

Query:  M-----CTFEFCYSCGGGWNSN
              C FEFC+ C G W  +
Subjt:  M-----CTFEFCYSCGGGWNSN

Q8TC41 Probable E3 ubiquitin-protein ligase RNF2175.0e-0635Show/hide
Query:  KCPAPYCEAVLVPERCNSFLP-KQVLECWGNALCEAMTKELAERMSWKKCPHCKIYVEKTEGCSHIIC-MCTFEFCYSCG
        KC +P+ E V     C  +    ++L  W + +      E  +R + +KCP CKI++++TEGC H+ C  C   FCY CG
Subjt:  KCPAPYCEAVLVPERCNSFLP-KQVLECWGNALCEAMTKELAERMSWKKCPHCKIYVEKTEGCSHIIC-MCTFEFCYSCG

Arabidopsis top hitse value%identityAlignment
AT2G21420.1 IBR domain containing protein3.1e-1133.33Show/hide
Query:  CSHSVCTDCISNHVVAKLEDNA---ANLKCPAPYCEAVLVPERCN-SFLPKQVLECWGNALCEAMTKELAERMSWKKCPHCKIYVEKTEGCSHIICMCTF
        C +  C+  +S   +++  D +   A +KC   +C    VP     S +  + L    + L +   K LA +  W++C  C   VE  EGC+HI C C F
Subjt:  CSHSVCTDCISNHVVAKLEDNA---ANLKCPAPYCEAVLVPERCN-SFLPKQVLECWGNALCEAMTKELAERMSWKKCPHCKIYVEKTEGCSHIICMCTF

Query:  EFCYSCGGGWN
        EFCY CG  WN
Subjt:  EFCYSCGGGWN

AT3G14250.1 RING/U-box superfamily protein6.4e-2526.79Show/hide
Query:  AKTMCTICTATKAAADMF-NSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCE------------------
        ++ +C IC   K ++D+F  +  C+H+ CTDC   +V  K+++NA+ +KCP   C  ++ P  C   +PK V + W   LCE                  
Subjt:  AKTMCTICTATKAAADMF-NSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCE------------------

Query:  --------------------------------------------------------AMTKELAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCG
                                                                A+  ++A+   W++CP CK YV+K EGC HI C C ++FCY CG
Subjt:  --------------------------------------------------------AMTKELAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCG

Query:  GGWNSNHAC
          W+S+HAC
Subjt:  GGWNSNHAC

AT3G53690.1 RING/U-box superfamily protein1.7e-2530.65Show/hide
Query:  SSIMAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEA--------------
        SS  A   C IC  +K+  + F  GGCSH  C DC+S ++ AKL+DN  +++CP   C   L P++C   LPK+V + WG+ALCEA              
Subjt:  SSIMAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEA--------------

Query:  -------------------------------------MTKE-------------------LAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCG
                                             MT E                   +A++  WK+CP CK Y+EK++GC ++ C C   FCY+CG
Subjt:  -------------------------------------MTKE-------------------LAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCG

AT5G37560.1 RING/U-box superfamily protein4.0e-1130.09Show/hide
Query:  CSHSVCTDCISNHVVAKLEDNA---ANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEAMTKELAERMSWKKCPHCKIYVEKTEGCSHIICMCTFE
        C +  C+  +S   +++  + +   A +KC   +C    VP   +              + + M K LA    W++C  CK  +E TEGC+HI C C +E
Subjt:  CSHSVCTDCISNHVVAKLEDNA---ANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEAMTKELAERMSWKKCPHCKIYVEKTEGCSHIICMCTFE

Query:  FCYSCGGGWNSNH
        FCY CG  W   H
Subjt:  FCYSCGGGWNSNH

AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein9.0e-1151.11Show/hide
Query:  KELAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCGGGWN
        K LA    W++C  C+  +E ++GC+HI C C  EFCY+CGGGWN
Subjt:  KELAERMSWKKCPHCKIYVEKTEGCSHIICMCTFEFCYSCGGGWN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTACCATCTTCTATAATGGCAAAAACCATGTGCACCATCTGTACGGCCACCAAAGCCGCCGCTGACATGTTCAACAGCGGTGGCTGCTCCCACTCCGTCTGCACCGATTG
CATCTCGAACCATGTCGTCGCCAAACTCGAAGACAACGCAGCAAACTTGAAGTGTCCAGCGCCGTACTGCGAGGCGGTGCTGGTGCCAGAAAGATGCAATTCATTCCTTC
CCAAACAAGTGTTGGAGTGCTGGGGGAATGCCCTTTGCGAGGCCATGACAAAGGAGCTGGCCGAGAGGATGAGTTGGAAGAAATGTCCCCACTGCAAGATTTATGTGGAG
AAGACTGAAGGTTGCTCCCATATCATCTGTATGTGTACGTTTGAGTTTTGTTATAGCTGTGGAGGAGGGTGGAATAGTAACCATGCGTGCCCTCAA
mRNA sequenceShow/hide mRNA sequence
CTACCATCTTCTATAATGGCAAAAACCATGTGCACCATCTGTACGGCCACCAAAGCCGCCGCTGACATGTTCAACAGCGGTGGCTGCTCCCACTCCGTCTGCACCGATTG
CATCTCGAACCATGTCGTCGCCAAACTCGAAGACAACGCAGCAAACTTGAAGTGTCCAGCGCCGTACTGCGAGGCGGTGCTGGTGCCAGAAAGATGCAATTCATTCCTTC
CCAAACAAGTGTTGGAGTGCTGGGGGAATGCCCTTTGCGAGGCCATGACAAAGGAGCTGGCCGAGAGGATGAGTTGGAAGAAATGTCCCCACTGCAAGATTTATGTGGAG
AAGACTGAAGGTTGCTCCCATATCATCTGTATGTGTACGTTTGAGTTTTGTTATAGCTGTGGAGGAGGGTGGAATAGTAACCATGCGTGCCCTCAA
Protein sequenceShow/hide protein sequence
LPSSIMAKTMCTICTATKAAADMFNSGGCSHSVCTDCISNHVVAKLEDNAANLKCPAPYCEAVLVPERCNSFLPKQVLECWGNALCEAMTKELAERMSWKKCPHCKIYVE
KTEGCSHIICMCTFEFCYSCGGGWNSNHACPQ