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MS011987 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011987
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionphytochromobilin:ferredoxin oxidoreductase, chloroplastic
Genome locationscaffold123_2:405945..406100
RNA-Seq ExpressionMS011987
SyntenyMS011987
Gene Ontology termsGO:0010019 - chloroplast-nucleus signaling pathway (biological process)
GO:0010024 - phytochromobilin biosynthetic process (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0050619 - phytochromobilin:ferredoxin oxidoreductase activity (molecular function)
GO:0050897 - cobalt ion binding (molecular function)
InterPro domainsIPR009249 - Ferredoxin-dependent bilin reductase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067231.1 phytochromobilin:ferredoxin oxidoreductase [Cucumis melo var. makuwa]3.8e-0971.15Show/hide
Query:  LLKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK
        + +T  LQLL   GKLTS+SLKFFSPIVIW+KF STESKYDIL  A +DYYK
Subjt:  LLKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK

XP_004139053.1 phytochromobilin:ferredoxin oxidoreductase, chloroplastic [Cucumis sativus]7.6e-1072.55Show/hide
Query:  LKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK
        L T + +LL   GKLTS+SLKFFSPIVIW+KF STESKYDILF A +DYYK
Subjt:  LKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK

XP_008450371.1 PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic [Cucumis melo]6.4e-0970.59Show/hide
Query:  LKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK
        L T + +LL   GKLTS+SLKFFSPIVIW+KF STESKYDIL  A +DYYK
Subjt:  LKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK

XP_022154370.1 phytochromobilin:ferredoxin oxidoreductase, chloroplastic [Momordica charantia]6.9e-1174.51Show/hide
Query:  LKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK
        L T + +LL   GKLTS+SLKFFSPIVIWTKFPST SKYDILF A +DYYK
Subjt:  LKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK

XP_038880083.1 phytochromobilin:ferredoxin oxidoreductase, chloroplastic [Benincasa hispida]4.4e-1072.55Show/hide
Query:  LKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK
        L T + +LL   GKLTS+SLKFFSPIVIW+KF STESKYDILF A +DYYK
Subjt:  LKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK

TrEMBL top hitse value%identityAlignment
A0A0A0LXG3 Uncharacterized protein3.7e-1072.55Show/hide
Query:  LKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK
        L T + +LL   GKLTS+SLKFFSPIVIW+KF STESKYDILF A +DYYK
Subjt:  LKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK

A0A1S3BP29 phytochromobilin:ferredoxin oxidoreductase, chloroplastic3.1e-0970.59Show/hide
Query:  LKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK
        L T + +LL   GKLTS+SLKFFSPIVIW+KF STESKYDIL  A +DYYK
Subjt:  LKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK

A0A5A7VNP0 Phytochromobilin:ferredoxin oxidoreductase1.8e-0971.15Show/hide
Query:  LLKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK
        + +T  LQLL   GKLTS+SLKFFSPIVIW+KF STESKYDIL  A +DYYK
Subjt:  LLKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK

A0A6J1DJE9 phytochromobilin:ferredoxin oxidoreductase, chloroplastic3.3e-1174.51Show/hide
Query:  LKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK
        L T + +LL   GKLTS+SLKFFSPIVIWTKFPST SKYDILF A +DYYK
Subjt:  LKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK

A0A6J1HBM1 phytochromobilin:ferredoxin oxidoreductase, chloroplastic4.1e-0968.63Show/hide
Query:  LKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK
        L T + +LL   GKLTS+SLKFFSPIVIWTK  STES YD+LF A +DYYK
Subjt:  LKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK

SwissProt top hitse value%identityAlignment
Q9SR43 Phytochromobilin:ferredoxin oxidoreductase, chloroplastic5.3e-0653.85Show/hide
Query:  GKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK
        GKLT +S+KFFSP+V+WT+F S++ K+  LF A ++YY+
Subjt:  GKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK

Arabidopsis top hitse value%identityAlignment
AT3G09150.1 phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)3.8e-0753.85Show/hide
Query:  GKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK
        GKLT +S+KFFSP+V+WT+F S++ K+  LF A ++YY+
Subjt:  GKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK

AT3G09150.2 phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)3.8e-0753.85Show/hide
Query:  GKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK
        GKLT +S+KFFSP+V+WT+F S++ K+  LF A ++YY+
Subjt:  GKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK

AT3G09150.3 phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)3.8e-0753.85Show/hide
Query:  GKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK
        GKLT +S+KFFSP+V+WT+F S++ K+  LF A ++YY+
Subjt:  GKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTACTGAAAACAGACTTCCTGCAGCTCTTATCGTTGAGCGGAAAGCTTACGAGCAAATCTTTGAAATTTTTCTCACCGATCGTGATATGGACTAAATTTCCCTCGACCGA
GTCCAAGTACGACATATTATTTTTTGCATCCATCGATTATTATAAG
mRNA sequenceShow/hide mRNA sequence
TTACTGAAAACAGACTTCCTGCAGCTCTTATCGTTGAGCGGAAAGCTTACGAGCAAATCTTTGAAATTTTTCTCACCGATCGTGATATGGACTAAATTTCCCTCGACCGA
GTCCAAGTACGACATATTATTTTTTGCATCCATCGATTATTATAAG
Protein sequenceShow/hide protein sequence
LLKTDFLQLLSLSGKLTSKSLKFFSPIVIWTKFPSTESKYDILFFASIDYYK