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MS011991 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011991
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description5'-3' exoribonuclease 3
Genome locationscaffold123_2:462907..463034
RNA-Seq ExpressionMS011991
SyntenyMS011991
Gene Ontology termsGO:0000956 - nuclear-transcribed mRNA catabolic process (biological process)
GO:0000967 - rRNA 5'-end processing (biological process)
GO:0006397 - mRNA processing (biological process)
GO:0010587 - miRNA catabolic process (biological process)
GO:0060149 - negative regulation of posttranscriptional gene silencing (biological process)
GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0004534 - 5'-3' exoribonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR027073 - 5'-3' exoribonuclease
IPR041412 - Xrn1, helical domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TMX03531.1 hypothetical protein EJD97_015864 [Solanum chilense]1.7e-0980.95Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        FYPYHYA FASDLKG GELNI+F++G PFKPFNQLL VFP A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
XP_004143781.1 5'-3' exoribonuclease 3 isoform X2 [Cucumis sativus]1.0e-0983.33Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        FYPYHYA FASDLKG GELNISF +G PFKPFNQLL VFP A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
XP_011655288.1 5'-3' exoribonuclease 3 isoform X1 [Cucumis sativus]1.0e-0983.33Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        FYPYHYA FASDLKG GELNISF +G PFKPFNQLL VFP A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
XP_038889945.1 5'-3' exoribonuclease 3 isoform X1 [Benincasa hispida]1.0e-0983.33Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        FYPYHYA FASDLKG GELNISF +G PFKPFNQLL VFP A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
XP_038889947.1 5'-3' exoribonuclease 3 isoform X2 [Benincasa hispida]1.0e-0983.33Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        FYPYHYA FASDLKG GELNISF +G PFKPFNQLL VFP A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
TrEMBL top hitse value%identityAlignment
A0A0A0KNF5 5'-3' exoribonuclease4.9e-1083.33Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        FYPYHYA FASDLKG GELNISF +G PFKPFNQLL VFP A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
A0A0R0GG90 5'-3' exoribonuclease1.9e-0980.95Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        FYPYHYA FASDLKG GEL+ISFK+G PFKPF+QLL VFP A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
A0A3Q7G7X3 5'-3' exoribonuclease8.4e-1080.95Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        FYPYHYA FASDLKG GELNI+F++G PFKPFNQLL VFP A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
A0A6J1CSZ5 5'-3' exoribonuclease1.9e-0980.95Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        FYPYHYA FASDLKG GEL+ISF +G PFKPFNQLL VFP A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
A0A6N2CD50 5'-3' exoribonuclease8.4e-1080.95Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        FYPYHYA FASDLKG GELNI+F++G PFKPFNQLL VFP A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
SwissProt top hitse value%identityAlignment
P0CL88 5'-3' exoribonuclease 24.9e-0759.52Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        FYPYHYA FA D +  G ++I F+   PFKPF QLL VFP A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
P0CL89 5'-3' exoribonuclease 24.9e-0759.52Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        FYPYHYA FA D +  G ++I F+   PFKPF QLL VFP A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
P97789 5'-3' exoribonuclease 16.4e-0757.14Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        +YPYHYA F SD++    L I F++G PFKPF QLL V P+A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
Q9FQ02 5'-3' exoribonuclease 24.8e-1071.43Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        FYPYHYA FASDLKG  +L+I F++G PFKPFNQLL V P+A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
Q9FQ03 5'-3' exoribonuclease 31.3e-1073.81Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        FYPYHYA FASDLK  GE++I F++G PFKPFNQLL VFP A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
Arabidopsis top hitse value%identityAlignment
AT1G54490.1 exoribonuclease 41.2e-0861.9Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        FYPYHYA FASDLK   +L I+F +G PFKPF+QL+   P A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
AT1G75660.1 5'-3' exoribonuclease 38.9e-1273.81Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        FYPYHYA FASDLK  GE++I F++G PFKPFNQLL VFP A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
AT5G42540.1 exoribonuclease 23.4e-1171.43Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        FYPYHYA FASDLKG  +L+I F++G PFKPFNQLL V P+A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
AT5G42540.2 exoribonuclease 23.4e-1171.43Show/hide
Query:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA
        FYPYHYA FASDLKG  +L+I F++G PFKPFNQLL V P+A
Subjt:  FYPYHYALFASDLKGHGELNISFKVG-PFKPFNQLLCVFPTA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTATCCCTATCATTATGCACTGTTTGCTTCTGATCTCAAGGGTCATGGTGAGCTGAATATTTCATTTAAAGTGGGCCCATTCAAGCCATTCAATCAGCTACTGTGTGT
TTTCCCTACTGCT
mRNA sequenceShow/hide mRNA sequence
TTTTATCCCTATCATTATGCACTGTTTGCTTCTGATCTCAAGGGTCATGGTGAGCTGAATATTTCATTTAAAGTGGGCCCATTCAAGCCATTCAATCAGCTACTGTGTGT
TTTCCCTACTGCT
Protein sequenceShow/hide protein sequence
FYPYHYALFASDLKGHGELNISFKVGPFKPFNQLLCVFPTA