CuGenDBv2

Gene ID	MS011997
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	nifU-like protein 2, chloroplastic
Genome location	scaffold640:11371..11523
RNA-Seq Expression	MS011997
Synteny	MS011997
Gene Ontology terms	GO:0016226 - iron-sulfur cluster assembly (biological process) GO:0097428 - protein maturation by iron-sulfur cluster transfer (biological process) GO:0005739 - mitochondrion (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR034904 - Fe-S cluster assembly domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034154.1 nifU-like protein 2 [Cucumis melo var. makuwa]

4.8e-09

71.43

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Query:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS
        VLEEIRPYLV     SLELVGIEEPIVKVRITGPAA        +  +LREKIPAIAA+QLLS
Subjt:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS

RYR63610.1 hypothetical protein Ahy_A04g021396 isoform C [Arachis hypogaea]

1.1e-08

69.84

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Query:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS
        VLEEIRPYLV     SLELVGIEEPIVKVRITGPAA        +  +LREKIP+IAA+QLLS
Subjt:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS

XP_008445979.1 PREDICTED: nifU-like protein 2, chloroplastic [Cucumis melo]

4.8e-09

71.43

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Query:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS
        VLEEIRPYLV     SLELVGIEEPIVKVRITGPAA        +  +LREKIPAIAA+QLLS
Subjt:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS

XP_022151795.1 nifU-like protein 2, chloroplastic [Momordica charantia]

4.8e-09

71.43

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Query:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS
        VLEEIRPYLV     SLELVGIEEPIVKVRITGPAA        +  +LREKIPAIAA+QLLS
Subjt:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS

XP_023517551.1 nifU-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo]

1.1e-08

69.84

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Query:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS
        VLEEIRPYLV     SLELVGIEEPIVKVRITGPAA        +  +LREKIP+IAA+QLLS
Subjt:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KRX2 Uncharacterized protein

5.2e-09

69.84

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Query:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS
        VLEEIRPYLV     SLELVGIEEPIVKVRITGPAA        +  +LREKIP+IAA+QLLS
Subjt:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS

A0A1S3BEN3 nifU-like protein 2, chloroplastic

2.3e-09

71.43

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Query:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS
        VLEEIRPYLV     SLELVGIEEPIVKVRITGPAA        +  +LREKIPAIAA+QLLS
Subjt:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS

A0A444ZC39 Uncharacterized protein

5.2e-09

69.84

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Query:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS
        VLEEIRPYLV     SLELVGIEEPIVKVRITGPAA        +  +LREKIP+IAA+QLLS
Subjt:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS

A0A5A7SSG4 NifU-like protein 2

2.3e-09

71.43

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Query:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS
        VLEEIRPYLV     SLELVGIEEPIVKVRITGPAA        +  +LREKIPAIAA+QLLS
Subjt:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS

A0A6J1DC70 nifU-like protein 2, chloroplastic

2.3e-09

71.43

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Query:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS
        VLEEIRPYLV     SLELVGIEEPIVKVRITGPAA        +  +LREKIPAIAA+QLLS
Subjt:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS

SwissProt top hits

e value

%identity

Alignment

Q84LK7 NifU-like protein 1, chloroplastic

3.4e-05

50.79

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Query:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS
        VL EIRPYL       L+ + I+ PIVKVR+TGPAA        ++ +LREKIP+I  +QLLS
Subjt:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLLS

Q84RQ7 NifU-like protein 3, chloroplastic

1.3e-04

51.61

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Query:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLL
        VL E+RPYL       LELV I+  +VKVR+TGPAA        L  +LRE IP+I A+QLL
Subjt:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLL

Q93W20 NifU-like protein 2, chloroplastic

6.5e-09

59.68

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Query:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLL
        VLEEIRPYL+     SL+LV IE+PIVK+RITGPAA        +  +LREKIP+IAA+QL+
Subjt:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLL

Arabidopsis top hits

e value

%identity

Alignment

AT4G25910.1 NFU domain protein 3

9.1e-06

51.61

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Query:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLL
        VL E+RPYL       LELV I+  +VKVR+TGPAA        L  +LRE IP+I A+QLL
Subjt:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLL

AT5G49940.1 NIFU-like protein 2

4.7e-10

59.68

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Query:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLL
        VLEEIRPYL+     SL+LV IE+PIVK+RITGPAA        +  +LREKIP+IAA+QL+
Subjt:  VLEEIRPYLV-----SLELVGIEEPIVKVRITGPAA-------ELAWQLREKIPAIAALQLL

Sequences

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CDS sequence

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GTACTTGAGGAGATAAGGCCTTACCTTGTTTCTCTTGAACTTGTGGGTATCGAGGAGCCAATAGTTAAAGTTAGGATCACAGGGCCAGCCGCTGAGTTGGCGTGGCAATT
GCGAGAGAAGATACCAGCCATAGCGGCACTTCAACTTTTGTCA

mRNA sequence

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GTACTTGAGGAGATAAGGCCTTACCTTGTTTCTCTTGAACTTGTGGGTATCGAGGAGCCAATAGTTAAAGTTAGGATCACAGGGCCAGCCGCTGAGTTGGCGTGGCAATT
GCGAGAGAAGATACCAGCCATAGCGGCACTTCAACTTTTGTCA

Protein sequence

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VLEEIRPYLVSLELVGIEEPIVKVRITGPAAELAWQLREKIPAIAALQLLS

MS011997 (gene) of Bitter gourd (TR) v1 genome