; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012001 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012001
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionBromo domain-containing protein
Genome locationscaffold640:30214..30498
RNA-Seq ExpressionMS012001
SyntenyMS012001
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573608.1 Bromodomain-containing protein 4B, partial [Cucurbita argyrosperma subsp. sororia]3.4e-2473.33Show/hide
Query:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNT-------EESLRLESPGSLDSSSNADDSVDNELDVEEETRDERM----QQFSTPEEKQDEGEE
        RRHKSDCLCAICVLK RRKEREEIAR+ KDQ+GAGN        EESLR ESPGS DSSSNADDS DNELDV+E+  + +M    +QFSTPEEKQDEGEE
Subjt:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNT-------EESLRLESPGSLDSSSNADDSVDNELDVEEETRDERM----QQFSTPEEKQDEGEE

Query:  EKDGE
        EKD E
Subjt:  EKDGE

XP_022149028.1 ribosomal protein L3-like [Momordica charantia]1.0e-2595.89Show/hide
Query:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAG-NTEESLRLESPGSLDSSSNADDSVDNELDVEEETRDE
        RRHKSDCLCAICVLK RRKEREEIARITKDQTGAG N EESLRLESPGSLDSSSNADDSVDNELDVEEETRDE
Subjt:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAG-NTEESLRLESPGSLDSSSNADDSVDNELDVEEETRDE

XP_022151838.1 ankyrin repeat, bromo and BTB domain-containing protein DDB_G0293800 isoform X1 [Momordica charantia]4.1e-3080.19Show/hide
Query:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNT-------EESLRLESPGSLDSSSNADDSVDNELDVEEETRDE-----RMQQFSTPEEKQDEGE
        RRHKSDCLCAICVLK RRKEREEIA+ITKDQ GAGN        EESLR++SPGSLDSSSNADDSVDNELDVEEET DE       QQFSTPEEKQDEGE
Subjt:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNT-------EESLRLESPGSLDSSSNADDSVDNELDVEEETRDE-----RMQQFSTPEEKQDEGE

Query:  EEKDGE
        EEKDGE
Subjt:  EEKDGE

XP_022151839.1 bromodomain-containing factor 1 isoform X2 [Momordica charantia]4.1e-3080.19Show/hide
Query:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNT-------EESLRLESPGSLDSSSNADDSVDNELDVEEETRDE-----RMQQFSTPEEKQDEGE
        RRHKSDCLCAICVLK RRKEREEIA+ITKDQ GAGN        EESLR++SPGSLDSSSNADDSVDNELDVEEET DE       QQFSTPEEKQDEGE
Subjt:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNT-------EESLRLESPGSLDSSSNADDSVDNELDVEEETRDE-----RMQQFSTPEEKQDEGE

Query:  EEKDGE
        EEKDGE
Subjt:  EEKDGE

XP_022967066.1 bromodomain testis-specific protein [Cucurbita maxima]1.0e-2573.58Show/hide
Query:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNT-------EESLRLESPGSLDSSSNADDSVDNELDVEEETRDE-----RMQQFSTPEEKQDEGE
        RRHKSDCLCAICVLK RRKEREEIAR+ KDQ+GAGN        EESLR ESPGS DSSSNADDS+DNELDV+E+  DE       +QFSTPEEKQDEGE
Subjt:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNT-------EESLRLESPGSLDSSSNADDSVDNELDVEEETRDE-----RMQQFSTPEEKQDEGE

Query:  EEKDGE
        EEKD E
Subjt:  EEKDGE

TrEMBL top hitse value%identityAlignment
A0A5A7SXG4 Bromodomain testis-specific protein2.8e-2469.81Show/hide
Query:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNT-------EESLRLESPGSLDSSSNADDSVDNELDVEEETRDE-----RMQQFSTPEEKQDEGE
        RRHKSDCLCAICVLK RR+EREE AR+ KDQTGAGN        EESLR ESPGS+DSSSNADDS+DNEL V+EET +E       QQFS P++KQDE E
Subjt:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNT-------EESLRLESPGSLDSSSNADDSVDNELDVEEETRDE-----RMQQFSTPEEKQDEGE

Query:  EEKDGE
        EEKD E
Subjt:  EEKDGE

A0A6J1D5Q0 ribosomal protein L3-like5.1e-2695.89Show/hide
Query:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAG-NTEESLRLESPGSLDSSSNADDSVDNELDVEEETRDE
        RRHKSDCLCAICVLK RRKEREEIARITKDQTGAG N EESLRLESPGSLDSSSNADDSVDNELDVEEETRDE
Subjt:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAG-NTEESLRLESPGSLDSSSNADDSVDNELDVEEETRDE

A0A6J1DDA2 ankyrin repeat, bromo and BTB domain-containing protein DDB_G0293800 isoform X12.0e-3080.19Show/hide
Query:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNT-------EESLRLESPGSLDSSSNADDSVDNELDVEEETRDE-----RMQQFSTPEEKQDEGE
        RRHKSDCLCAICVLK RRKEREEIA+ITKDQ GAGN        EESLR++SPGSLDSSSNADDSVDNELDVEEET DE       QQFSTPEEKQDEGE
Subjt:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNT-------EESLRLESPGSLDSSSNADDSVDNELDVEEETRDE-----RMQQFSTPEEKQDEGE

Query:  EEKDGE
        EEKDGE
Subjt:  EEKDGE

A0A6J1DE88 bromodomain-containing factor 1 isoform X22.0e-3080.19Show/hide
Query:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNT-------EESLRLESPGSLDSSSNADDSVDNELDVEEETRDE-----RMQQFSTPEEKQDEGE
        RRHKSDCLCAICVLK RRKEREEIA+ITKDQ GAGN        EESLR++SPGSLDSSSNADDSVDNELDVEEET DE       QQFSTPEEKQDEGE
Subjt:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNT-------EESLRLESPGSLDSSSNADDSVDNELDVEEETRDE-----RMQQFSTPEEKQDEGE

Query:  EEKDGE
        EEKDGE
Subjt:  EEKDGE

A0A6J1HR06 bromodomain testis-specific protein5.1e-2673.58Show/hide
Query:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNT-------EESLRLESPGSLDSSSNADDSVDNELDVEEETRDE-----RMQQFSTPEEKQDEGE
        RRHKSDCLCAICVLK RRKEREEIAR+ KDQ+GAGN        EESLR ESPGS DSSSNADDS+DNELDV+E+  DE       +QFSTPEEKQDEGE
Subjt:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNT-------EESLRLESPGSLDSSSNADDSVDNELDVEEETRDE-----RMQQFSTPEEKQDEGE

Query:  EEKDGE
        EEKD E
Subjt:  EEKDGE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G58025.1 DNA-binding bromodomain-containing protein4.1e-0436.73Show/hide
Query:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNTEESLRLESPGSLDSSSNADDSVDNELDVEEETRDERMQQFSTP--------EEKQDEGEEE
        R HKSDC+CAICVLK R++ERE           +G  EES    SP   +SS N  + +D ++D + E     + +  +P        E KQ+  EEE
Subjt:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNTEESLRLESPGSLDSSSNADDSVDNELDVEEETRDERMQQFSTP--------EEKQDEGEEE

AT1G58025.2 DNA-binding bromodomain-containing protein4.1e-0436.73Show/hide
Query:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNTEESLRLESPGSLDSSSNADDSVDNELDVEEETRDERMQQFSTP--------EEKQDEGEEE
        R HKSDC+CAICVLK R++ERE           +G  EES    SP   +SS N  + +D ++D + E     + +  +P        E KQ+  EEE
Subjt:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNTEESLRLESPGSLDSSSNADDSVDNELDVEEETRDERMQQFSTP--------EEKQDEGEEE

AT1G58025.3 DNA-binding bromodomain-containing protein4.1e-0436.73Show/hide
Query:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNTEESLRLESPGSLDSSSNADDSVDNELDVEEETRDERMQQFSTP--------EEKQDEGEEE
        R HKSDC+CAICVLK R++ERE           +G  EES    SP   +SS N  + +D ++D + E     + +  +P        E KQ+  EEE
Subjt:  RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNTEESLRLESPGSLDSSSNADDSVDNELDVEEETRDERMQQFSTP--------EEKQDEGEEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGCGCCACAAATCTGATTGTTTATGTGCAATATGTGTTTTAAAGCACCGTAGAAAGGAGCGCGAAGAGATTGCTAGAATTACTAAAGACCAAACTGGAGCTGGCAATAC
CGAGGAATCCTTGCGTTTGGAAAGTCCTGGCAGCTTGGACTCATCATCAAATGCAGATGATTCAGTAGACAATGAATTAGACGTTGAGGAAGAAACAAGAGACGAGAGAA
TGCAACAGTTTAGCACTCCAGAGGAGAAGCAAGATGAAGGCGAGGAGGAAAAAGATGGAGAA
mRNA sequenceShow/hide mRNA sequence
AGGCGCCACAAATCTGATTGTTTATGTGCAATATGTGTTTTAAAGCACCGTAGAAAGGAGCGCGAAGAGATTGCTAGAATTACTAAAGACCAAACTGGAGCTGGCAATAC
CGAGGAATCCTTGCGTTTGGAAAGTCCTGGCAGCTTGGACTCATCATCAAATGCAGATGATTCAGTAGACAATGAATTAGACGTTGAGGAAGAAACAAGAGACGAGAGAA
TGCAACAGTTTAGCACTCCAGAGGAGAAGCAAGATGAAGGCGAGGAGGAAAAAGATGGAGAA
Protein sequenceShow/hide protein sequence
RRHKSDCLCAICVLKHRRKEREEIARITKDQTGAGNTEESLRLESPGSLDSSSNADDSVDNELDVEEETRDERMQQFSTPEEKQDEGEEEKDGE