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MS012003 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012003
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold640:37945..38502
RNA-Seq ExpressionMS012003
SyntenyMS012003
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR005135 - Endonuclease/exonuclease/phosphatase
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3485417.1 reverse transcriptase [Gossypium australe]4.0e-3742.16Show/hide
Query:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTICWSNFV--
        MKT+CWNVRGLG PR  R +    +++NPH+VFL+ETK N      ++    +   F + + G  GGLCL W D + V++R +S  H+D  + W   +  
Subjt:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTICWSNFV--

Query:  -WRFTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTW
         WRFTGFYG P +  R   W+LLKR+   ++  WLV GDFN I +  EKS    S +   +  FR+TL+ C LSD+G+ G  +TW
Subjt:  -WRFTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTW

XP_028075737.1 uncharacterized protein LOC114277953 [Camellia sinensis]1.2e-3844.15Show/hide
Query:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTICWSNFV--
        MK LCWN RGLG+PRT R +   L+++ P +VFL+ETK ++    +++  L    CFTV+  GLSGGL LLW+  + + I+ FS  HVD  I   + V  
Subjt:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTICWSNFV--

Query:  WRFTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTWCNNR
        W FTGFYG+P   +R  SW LL+R+ +  +  WL  GDFN I +  EKS    +     +  FR+ L  C L+D+GF G+ FTWCN R
Subjt:  WRFTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTWCNNR

XP_030924992.1 uncharacterized protein LOC115952038 [Quercus lobata]2.8e-3846.52Show/hide
Query:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTICWSNF-VW
        M  L WN RGLG  R  R + D +R K P+LVFL+ETK N S   KL+  L +   F V    LSGGL L WM+ +D+ IR FSP+H+D  +       W
Subjt:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTICWSNF-VW

Query:  RFTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTWCNNR
        RFTGFYG P+T  R  SW LL+ + +  +  W+  GDFN I    EKS  P   D  +   FR+ LD C   D+GF G PFTWCNNR
Subjt:  RFTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTWCNNR

XP_040251443.1 uncharacterized protein LOC120968610 [Aegilops tauschii subsp. strangulata]3.1e-3740.76Show/hide
Query:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTICWSNFVWR
        M  + WN RGLG+P T R +   ++++ P L+F++ETK        LK +L + GCF VNS GLSGG+ L W   VDVS+  FS +H+D  +  +N  WR
Subjt:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTICWSNFVWR

Query:  FTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTWCN
        FTGFYG P+   R HSW  L  ++   +  WL  GDFN    H+++     +     +  FRE +  C+L D+G+ G PFTW N
Subjt:  FTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTWCN

XP_042950313.1 uncharacterized protein LOC122282426 [Carya illinoinensis]1.4e-3743.85Show/hide
Query:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTICWSN-FVW
        MKT+CWN RGLG+P   R + D + R+ P L+FL ETK ++   + LK  L +  CF+V+S G SGGL LLW   + V +R FS  H+D  I   +  VW
Subjt:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTICWSN-FVW

Query:  RFTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTWCNNR
        RFTG YGHP T  R  +WNL++ + + +   WLVGGD N +  H  +         S I  FRE L  C L D+G+ G  FTW N R
Subjt:  RFTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTWCNNR

TrEMBL top hitse value%identityAlignment
A0A2N9G656 Reverse transcriptase domain-containing protein1.9e-3743.85Show/hide
Query:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTI-CWSNFVW
        M  L WN RGLG+ RT + +   +R ++P +VFLIET  N      L+  L +     V++ G  GGLCL W D V++SIR FSP+H+D  I    N  W
Subjt:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTI-CWSNFVW

Query:  RFTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTWCNNR
        RFTGFYG P  + R  SWNLL+ + +  +  WL  GDFN I  + EK       +  +   FRE LD C L D+G+ G+P+TWCNNR
Subjt:  RFTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTWCNNR

A0A2N9J5D9 CCHC-type domain-containing protein9.7e-3744.21Show/hide
Query:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTICW----SN
        MKT+  N RGLG+P T   + + ++ + P +VFL+ET+        +++ L   GCF V+     GGL LLW DSVD+ I+ +S +H+D   CW    + 
Subjt:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTICW----SN

Query:  FVWRFTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTWCNNR
          WRFTGFYG P T  R HSW LL+R+    N  WLV GDFN I    EK         S ++ FRE L+ CSL+D+GFHG  FTW NNR
Subjt:  FVWRFTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTWCNNR

A0A2N9J7Z5 Reverse transcriptase domain-containing protein1.9e-3743.85Show/hide
Query:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTI-CWSNFVW
        M  L WN RGLG+ RT + +   +R ++P +VFLIET  N      L+  L +     V++ G  GGLCL W D V++SIR FSP+H+D  I    N  W
Subjt:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTI-CWSNFVW

Query:  RFTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTWCNNR
        RFTGFYG P  + R  SWNLL+ + +  +  WL  GDFN I  + EK       +  +   FRE LD C L D+G+ G+P+TWCNNR
Subjt:  RFTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTWCNNR

A0A5B6WXI9 Reverse transcriptase1.9e-3742.16Show/hide
Query:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTICWSNFV--
        MKT+CWNVRGLG PR  R +    +++NPH+VFL+ETK N      ++    +   F + + G  GGLCL W D + V++R +S  H+D  + W   +  
Subjt:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTICWSNFV--

Query:  -WRFTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTW
         WRFTGFYG P +  R   W+LLKR+   ++  WLV GDFN I +  EKS    S +   +  FR+TL+ C LSD+G+ G  +TW
Subjt:  -WRFTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTW

A0A803QLY3 Uncharacterized protein1.3e-3644.39Show/hide
Query:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTICWSNFV-W
        M TL WNV+GLG+P T R +   + R  P LVF++E+K N+     L + L + GCF V + G SG L LLW + V+  +  FSP H+D  I       W
Subjt:  MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTICWSNFV-W

Query:  RFTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTWCNNR
        RFT FYG P    R  SW LL RI    +  W VGGDFN I    EK   P      LI  FR+ LDAC L ++ F GS +TWCN R
Subjt:  RFTGFYGHPKTHIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTWCNNR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACTCTCTGTTGGAATGTCCGAGGGTTGGGGGATCCGAGGACATTCCGAGTTATATGCGACTTTCTACGTCGTAAAAACCCCCACCTTGTCTTTCTTATTGAAAC
GAAATGTAACAGTTCGCTTACTAATAAATTGAAACTCTCTCTTCACTATTTTGGTTGTTTTACTGTCAACAGTTCGGGTCTCAGTGGTGGCCTTTGCCTTTTATGGATGG
ATTCGGTGGATGTCTCTATTCGACCATTTTCCCCTAATCATGTTGACTATACTATTTGTTGGTCCAATTTTGTATGGCGTTTTACAGGTTTCTATGGCCATCCTAAAACC
CATATCCGCATCCACAGTTGGAATCTCCTGAAGCGGATTTATAATTCAGATAATTCCACATGGCTTGTTGGTGGGGACTTTAATGCAATTTTTTGGCATTCTGAAAAGTC
TACTGATCCAACTTCTTTAGACAACAGCCTTATTTCTCAATTTAGGGAGACCTTGGACGCCTGCTCTCTCTCTGATATGGGTTTCCACGGTTCCCCTTTCACTTGGTGTA
ACAACCGT
mRNA sequenceShow/hide mRNA sequence
ATGAAAACTCTCTGTTGGAATGTCCGAGGGTTGGGGGATCCGAGGACATTCCGAGTTATATGCGACTTTCTACGTCGTAAAAACCCCCACCTTGTCTTTCTTATTGAAAC
GAAATGTAACAGTTCGCTTACTAATAAATTGAAACTCTCTCTTCACTATTTTGGTTGTTTTACTGTCAACAGTTCGGGTCTCAGTGGTGGCCTTTGCCTTTTATGGATGG
ATTCGGTGGATGTCTCTATTCGACCATTTTCCCCTAATCATGTTGACTATACTATTTGTTGGTCCAATTTTGTATGGCGTTTTACAGGTTTCTATGGCCATCCTAAAACC
CATATCCGCATCCACAGTTGGAATCTCCTGAAGCGGATTTATAATTCAGATAATTCCACATGGCTTGTTGGTGGGGACTTTAATGCAATTTTTTGGCATTCTGAAAAGTC
TACTGATCCAACTTCTTTAGACAACAGCCTTATTTCTCAATTTAGGGAGACCTTGGACGCCTGCTCTCTCTCTGATATGGGTTTCCACGGTTCCCCTTTCACTTGGTGTA
ACAACCGT
Protein sequenceShow/hide protein sequence
MKTLCWNVRGLGDPRTFRVICDFLRRKNPHLVFLIETKCNSSLTNKLKLSLHYFGCFTVNSSGLSGGLCLLWMDSVDVSIRPFSPNHVDYTICWSNFVWRFTGFYGHPKT
HIRIHSWNLLKRIYNSDNSTWLVGGDFNAIFWHSEKSTDPTSLDNSLISQFRETLDACSLSDMGFHGSPFTWCNNR